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Monocle 3 deprecates lots of methods, it would be great to use scalafix to automatically refactor the ones that have replacements. Here is a list of changes:
- [ ] `set` to `replace`
- [ ] `setOpt…
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Hello :)
I've created a helm chart to deploy monocle in a kubernetes cluster. It's available here:
https://github.com/achedeuzot/monocle-helm-charts
If you're interested, I can transfer the …
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Whenever I start MC, the key for the monocle (default: Z) is reset to Z, no matter what I set it to.
Could you fix that? I use Z for something else, and having to reset it each time is annoying.
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Here's a silly question about a minor annoyance.
When in monocle mode (assuming you're using gaps and compton), every time you open a new window, you get a new shadow on top of the previous shadows w…
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### Expected behavior
Floating windows should have the border color and width configured in .config/river/init
### Actual behavior
A floating window displays the river default border at login or in…
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I receive the same error with #26 , however, it does not work when manually set ncenter = 100, 50 or 10, and actually the the number of the cells is 1099. When set auto_param_selection = F, it costs …
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Hi
I am using monocle for differential gene expression analysis of single cells. I am trying to compare the expression of genes of a cell subpopulation (a cluster in tSNE plot for example) for two di…
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Hi,
I followed the instruction to install Monocle 3 till the last step, it stucked as follows for overnight. What could be the reason?
Thank you!
Elaine
> devtools::install_github("cole-trapnel…
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Hi all,
I have a large dataset with ~102,000 cells. I used the Monocle 3 workflow: preprocessCDS -> reduceDimension via UMAP -> clusterCells -> learnGraph with DDRTree -> orderCells
The clustering …
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I am tries to implement monocle example as shown below :
Code :
content1.html
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