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**Background:** The goal of this ticket is to provide a Google sheet-based report for "GenomeConnect - Simons Searchlight" as requested by GenomeConnect team. There is no existing Excel-based report …
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We have this sequence in our ITS1 database: https://ncbi.nlm.nih.gov/nuccore/EF437222
That was a direct submission in 2007 from Australia, which listed the species as ``Phytophthora sp. Kunnunara``…
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**Submitter Name and ORCiD**
Amy Zimmerman
**Submission ID**
1d87912e-9c22-4717-acf3-483a9335e770
**Have data already been generated for your study?**
No
**PI Name and ORCiD**
Amy Zimmerm…
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@rrwick a quick question. I know that the contig read depth is normalized to 1x; is the absolute (non-normalized) average read depth reported anywhere? This question has come up a few times, in part…
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Using free-text entry for the Sequencing Platform field (instrument_model in the submission.xml file) has generated NCBI processing issues in previous submissions. For example, entering "Illumina HiSe…
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Our current AIRR submission dialog uploads all data files, together with the corresponding MiAIRR instance, to CEDAR's submission server. When the upload is complete, the submission server generates t…
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**Overview of the Feature Request**
Possibility of exporting a dataset metadata in a format for NCBI's Genbank/SRA
**What kind of user is the feature intended for?**
(Example users roles: API U…
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- [ ] check the runinfo to make sure the sample can be combined (i.e. same pairedness, insert size, read length)
- [ ] make sure we don't process the same file twice
- [ ] concatenate output file…
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I have noticed strange behaviour using the `PubMedFetcher` API.
When you try to use the `article_by_doi` method, often it does not return an article, even when that DOI is available in PubMed. I du…