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File " compilation 25", line 5, in argmap_write_gexf_21
File "/home/afarrahi/.local/share/mise/installs/python/3.11.9/lib/python3.11/site-packages/networkx/readwrite/gexf.py", line 86, in
…
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Following the discussion in #784, it would be really cool to have a `DistanceMatrix` plotting method that created a networkx graph (as a matplotlib `Figure`). See [here](http://stackoverflow.com/quest…
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## Summary
There are many applications in which it is useful to generate a graph representation of a pyomo model using NetworkX. It would be nice to have a single common function/module in Pyomo wi…
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Implementation here (untested for hyperedges): https://github.com/funkelab/motile_toolbox/blob/b8b215f2c33c68a233b3cf1de85e50328a72ae4c/src/motile_toolbox/candidate_graph/graph_to_nx.py
But I think…
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From version 3 of NetworkX, PageRank was made a private function, so it is no longer accessible to the AuthorRank library causing the following error:
```python
-----------------------------------…
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Hi,
I was playing with the genetic programming commands, notably gp.graph. It looks to me like the example commands provided in the documentation and notebook do not work.
- Block 16 of [this note…
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networkx.Graph makes copious use of Python dictionaries, which are of course memory hogs. It would dramatically improve space efficiency to replace it with a different graph class that had the same in…
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### Do you need to file an issue?
- [X] I have searched the existing issues and this feature is not already filed.
- [ ] My model is hosted on OpenAI or Azure. If not, please look at the "model pr…
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**Is your feature request related to a problem? Please describe.**
Dear Grakel developers, I'm trying to generate grakel graphs from numpy connectivity matrices. I have two possible scenarios.
1) A …
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Hey there,
It would be awesome to have `scipy.sparse.csgraph.connected_components` implemented in JAX. I guess this relates to an old request (https://github.com/jax-ml/jax/discussions/9214) that I a…