-
Submitted by Jeffrey Kopsick:
We noticed a mismatch between the SNT GUI and two SNT scripting interfaces (both Python based: pyimagej and SNT’s Python scripting interface used in the SNT GUI) for …
-
I tried synthesizing some pyramidal neurons last night, but I ran into a TypeError because a 1D vector was expected. I know it is not the source because I already synthesized some neocortex interneuro…
-
Lots of people ask this, and I think it's only going to become more important:
Off the top of my head:
* http://www.brainimagelibrary.org/ - brain imaging data (e.g. brainsaw)
* https://idr.ope…
-
-
## 🚀 Feature
Neuron traces are used to determine the pathway of axons/dendrites in 3D images of the brain. One common file format for traces is [SWC](http://www.neuronland.org/NLMorphologyConverter/M…
-
I am unable to download neurons using the MouseLightAPI (version 0.1.7 of morphapi) , for all neurons I try to download, I receive the follwing error:
> Could not fetch the neuron AA1544 for the f…
-
I wanted to test BSB within the ebrains jupyterlab thus I did the following code and got some errors.... :
[BSB_test2.zip](https://github.com/dbbs-lab/bsb/files/11463773/BSB_test2.zip)
````
!pi…
-
Good morning! I'm just having loads of these:
```
Warning: the soma does not conform the three point soma spec
The only valid neuro-morpho soma is:
1 1 x y z r -1
2 1 x (y-r) z r 1
3 1 x (y…
-
* [x] NeuroMorpho selector
* [x] Introducing morphologies guide
* [x] inc/out blocksorted ConnSet
* [x] Conn Targets instead of CT
* [x] Describe and demystify caching in VI
* [x] Make VI work on part…
-
Things like SWC and NeuroMorpho.
The caveat is that these reconstructions are not made with modelling in mind, so they usually have various issues that prevent them from being used "as is". So the …