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Hi,
I want to run some TCGA queries using TCGAbiolinks package inside my nextflow pipeline.
Is there a recommended dockefile to make use in this case?
I tried this but it didn't work. the TCG…
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Hi @kirilenkobm and @MichaelHiller,
Thank you for providing this pipeline!
I am using make_lastz_chains version 2.0.8 in our Slurm cluster. When I run the test example `./make_chains.py target q…
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As a **community user** I want **to be able to understand how the Gentropy ariflow pipeline works ** because **I want to reproduce it with nextlfow.**
## Background
Background to this task is a…
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### Ask away!
Hello,
I am trying to get the demo model to work using the following script on HPC and I get a couple of error Plus 4 more processes waiting for tasks…
Doing reference based transcr…
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### Description of the bug
Hello,
I am getting the follwoing error when i run tf activity pipeline
Command output:
[1] "Reading genes.gtf elements of type gene"
[1] "Found 0 features"
…
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Nextflow 22.04 brings with it two new features which should give much cleaner syntax for collecting tool versions: channel topics using `topic` (see https://github.com/nf-core/modules/issues/4517) and…
ewels updated
2 months ago
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## nf-core
nf-core produces pipelines with gold standard tools for various analyses.
- Workflow manager using `nextflow` language.
- Compatible with SLURM
- Uses Docker, Singularity and conda t…
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### Lesson Title
Introduction to Bioinformatics workflows with Nextflow and nf-core
### Lesson Repository URL
https://github.com/carpentries-incubator/workflows-nextflow
### Lesson Website URL
ht…
gperu updated
2 months ago
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~~Now that RL MLE model fitting library is ready, I'd like to use it as the first MVP of our new analysis pipeline ([doc here](https://alleninstitute.sharepoint.com/:w:/s/NeuralDynamics/EU0Nq3tPleRInc…
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### Description of the bug
I'm getting an issue with a single file on the DEEPTOOLS_PLOTHEATMAP_PEAKS step of the pipeline (out of 140). I'm trying to resume the pipeline but it keeps hanging on this…