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### Describe the bug
ValueError: identifier already in use: is_a (Relationship('is_a', name='is a'))
### To Reproduce
1. Use https://github.com/althonos/pronto to create an Ontology using the…
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Data transformations (obo:OBI_0200000) are based on algorithms (obo:IAO_0000064). This relations is not very straight forward but expressed by the following restriction with class obo:OBI_0200000 ('Da…
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The general idea would be to eliminate as much mechanism as possible as far as deployment and maintenance of multiple pipelines and servers. To this end, I've proposed that NEO (the neo.owl owltools o…
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While I cannot share the node embedding (for now) since I am gzipping it to upload it on internet archive, in the meantime I can share some visualizations on the TransE embedding made with the GraPE l…
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Hi,
I've been having some problems using the bulk loader. After finishing a load (or sometimes before finishing), the `virtuoso-t` process hangs and stops responding to all clients and signals. Thi…
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When classes are "hard mapped " through human expert review between resources like ENVO and SWEET, we need an annotation property that reflects the nature of this link.
Ideally, this would be the sam…
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Most OBOs are CC-BY, Wikidata requires CC-0. Some ontologies have apparently granted Wikidata permission to redistribute part or all of their ontology.
We want to make sure this is streamlined with a…
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PATO has several relational qualities that refer to some `norm`, where `norm` is also a quality. For example, consider [increased mass density](http://purl.obolibrary.org/obo/PATO_0001788)
```
den…
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Is there any way we can, OBO wide, agree to
- move to dc:creator with orcids as values OR
- move to oio:created_by with orcids as values
and
- agree that dc:contributor _should always_ refer to…
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Several ontologies contains annotations that have not been manually curated/edited, but are instead the result of some kind of automatic generation process.
For example, FlyBase’s _Drosophila_ anat…