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As the benchmarking API is approaching a beta state, sooner than later benchmarking communities are going to be involved in the data uploading process. So, when the reference validation programs apply…
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Add Barplot, Visualizer and Event Table as NPM package
https://github.com/inab/Scientific_Barplot
https://github.com/inab/OpenEBench_scientific_visualizer
https://github.com/inab/bench_event_tabl…
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https://dev-openebench.bsc.es/scientific/OEBC002
Comparison Matrix not being displayed for certain datasets (probably cannot read a certain data format)
the 'Quest for Orthologs - 2020 Reference…
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The [README for this script](https://github.com/iRNA-COSI/APAeval/blob/main/summary_workflows/quantification/Q2/benchmarking_dockers/apaeval_metrics/Leo_MatchPAsites_GT/README.md#issues) mentions an i…
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Please include any references or links to others if you find them!
+ [x] The [**Minimal Information About a Challenge** schema](https://github.com/Sage-Bionetworks/MIAC-schema) that @milen-sage cre…
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Similar to what I asked in #154, could you please replace `community` with "APAeval" and remove the trailing "_P" in [line 89 in validation.py](https://github.com/yuukiiwa/APAeval-summary-workflow/blo…
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At the moment the output file is called `{challenge_name}_summary.json` (e.g. `Q2_summary.json`), which causes issue with the visualisation as the js code used expects the file to be called `{challeng…
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The `_id` of the aggregation object contains two hardcoded parts that are outdated. Although they do not cause any issues, it would be good for them to have meaningful and updated values.
This valu…
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The summary workflow creates three assessments (`n_matched_sites`, `n_unmatched_sites`, `correlation`) but the first two have the same `_id`, which causes issues when adding the results to the databas…
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For the visual aspects of OpenEbench it would be interesting to add a label "Logo" to the links property which accepts an Uri as a value in the Community Schema.