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Hi there,
I've been scouring the documentation for how --onlyOrthologs works in hal2maf but haven't been able to figure it out. I'm working on identifying conserved sequences in a series of distant…
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* **PTHR ID & PTN node:**
PTN000162283 (PTHR43380)
* **Sequences with problematic annotation (ID + gene/protein name):**
Human P12694 and orthologs
* **Type of Issue: Erroneous source or err…
sjm41 updated
4 months ago
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Hello! Just wanted to bring to your attention an issue I encountered while setting up a mid-sized annotation job using [these instructions](https://github.com/eggnogdb/eggnog-mapper/wiki/eggNOG-mapper…
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Let's say you had 100 strains of a particular species. If you did an all-vs-all clustering of proteins, would those resulting clusters be considered orthologs?
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Model genes may not always have a prose summary available. It may be useful to fetch the summary for any available ortholog, with the explicit warning that the summary may not be exactly relevant for …
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Hi,
I'm trying to use aTRAM to select orthologs from reads of some WGS projects, but I'm having an time out error while running atram.py. Any idea what may be causing this?
Thanks in advance for y…
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Dear all,
The proposal has been made to obsolete GO:0036132 13-prostaglandin reductase activity (5 EXP annotations: human PTGR1 and orthologs) & replace by GO:0047522 15-oxoprostaglandin 13-oxida…
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From Damian:
> (1) Disease IDs, terms and HPO annotations
> (2) Mouse Strain ID, Gene ID, Gene symbol and MP annotations (I also need the IMPC annotations to be in there and only single gene reco…
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For example, I want to use the agaricales_odb10 as reference database to pick single copy orthologs, how can I change the Fungi_odb10 to Agaricales_odb10?
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