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I was using casm/pbs on a cluster that uses slurm for scheduling but for some reason has both sbatch and qsub available as submission commands. Because getsoftware() first looks for qsub it determined…
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Does the PBS plugin support the pipelines (as in Jenkins 2.0)? I would like to set up multibranch pipelines with our cluster nodes as the slaves.
ghost updated
8 years ago
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The following code runs to completion, but no job is ever submitted to the cluster's queue.
It prints what appears to be a valid jobScript, but when I return to the terminal and run qstat -sxw, then…
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I am running into a similar problem as issue #345
When using `--profile` on a SGE cluster (with [sge profile](https://github.com/Snakemake-Profiles/sge)), a snakemake rule is using the base conda e…
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I want to assemble metagenomic data on a cluster-server.
Is it possible to use IDBA-UD in connection with MPI-Parallelization, Torque PBS or OpenMP?
Thanks,
david
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It is used by some runners and in some configurations but not in others. The elimination of this would simplify the configuration of Galaxy and be the biggest unification of runner behavior since they…
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We're going to have several years of data coming in next week. Can we get a script to read and clean the data on the cluster and some instructions for the students? I don't know who will actually do…
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The modules that are hardcoded in a dist configuration are potentially not compatible with the modules powering HOD itself, for example if HOD was installed with a more recent toolchain and/or Python …
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For the future but long term it'd be great to see examples in all the common cluster managers/schedulers
-eg say; slurm, condor, moab, and pbs
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Hi,
I'm running cactus on a partition of our cluster that has 64 cpus. At first the run seems to go ok, cactus works! The problem is that because the walltime is only 24h I have to resume multiple…