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# Documentation
With gh-90095 being closed out by #116660, I believe a section on _Advanced Usage_ of the `pdb` module would be beneficial. While the current documentation for `pdb` does discuss th…
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## 🐛 Bug
I'd like to debug the `random_images` function taken from the first example. However, when adding a `breakpoint()` line in that function, python crashes.
### Environment
- PyTorch …
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### Problem to solve
PDB entries with extended Chemical Component Dictionary (CCD) or PDB IDs will be distributed in PDBx/mmCIF format only, as announced by the wwPDB in collaboration with the [PDBx…
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Part of epic cBioPortal/cbioportal#2054
remove pdb data tables: pdb_uniprot_alignment, pdb_uniprot_residue_mapping
SQL files
- [x] db-scripts/src/main/resources/migration.sql
- [x] db-scripts/s…
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Part of epic cBioPortal/cbioportal#2054
remove pdb data tables: pdb_uniprot_alignment, pdb_uniprot_residue_mapping
SQL files
- [x] db-scripts/src/main/resources/migration.sql
- [x] db-scripts/s…
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When trying to read this file (and other similar ones), I get:
```julia
julia> read("vmd.pdb", BioStructures.PDB)
ERROR: Two copies of the same atom have the same alternative location ID. Existin…
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### What happened?
Sort description:
Some operators such as the percona one, utilize the maxUnavilable field of the pdb. Unfortunately, the pdb controller in the undercluster can't work with that fie…
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Kindly refer the file attached
The data from the file is used for both MolFromPDBFile() and MolFromPDBBlock()
```
#PDB FILE
from rdkit import Chem
from rdkit.Chem import AllChem, Draw, rdDepi…
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Hi,
I cannot seem to run the IMGT renumbering for some TCR pdb structures.
_(base) python Example_scripts_and_sequences/ImmunoPDB.py -i 999-coot-1.pdb -o test4_999.pdb -s imgt --receptor tr
/sc…
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In the structure page, 'pdb' is lowercase in "pdb structure" in the current release, but it used to be uppercase ("PDB stucture").
example: https://www.ebi.ac.uk/interpro/structure/PDB/1t2v/