BioJulia BioStructures.jl issues

BioJulia / BioStructures.jl

A Julia package to read, write and manipulate macromolecular structures

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issues

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biojulep: iterators or fold for structures

#57 timholy opened 1 month ago
1
Add recursive copy for structures

#56 timholy closed 1 month ago
8
3-vector for coordinates?

#55 timholy opened 1 month ago
1
Concrete fields for `Transformation`

#54 timholy closed 1 month ago
2
fix compat note

#53 lmiq closed 4 months ago
1
selection syntax

#52 lmiq closed 4 months ago
8
fix typo: run_strude -> run_stride

#51 lmiq closed 4 months ago
2
Speed up parsing of PDB line

#50 timholy closed 4 months ago
4
x, y, z seem too generic to export

#49 timholy closed 4 months ago
3
failing to read PDB files generated by VMD

#48 lmiq opened 4 months ago
60
Precompile `read(filename, PDB)`

#47 timholy closed 4 months ago
3
Bump julia-actions/cache from 1 to 2

#46 dependabot[bot] closed 4 months ago
0
Feature suggestion: support BinaryCIF file format

#45 marcom opened 8 months ago
1
Strip whitespaces from atom/element names

#44 babaid opened 11 months ago
1
add secondary structure Information

#43 shuuul closed 1 year ago
7
Add secondary structure prediction.

#42 shuuul closed 1 year ago
2
export fixlists!

#41 shuuul closed 1 year ago
1
MMCIF reading error

#40 ivanpmartell closed 1 year ago
0
Update BioAlignments and BioSequences compat. Change LongAminoAcidSeq to LongSequence{AminoAcidAlphabet}

#39 kool7d closed 1 year ago
3
convert pdb to mol

#38 Nick-Mul closed 1 year ago
2
Fix Kabsch Algorithm to Prevent Reflections

#37 nhz2 closed 2 years ago
3
CompatHelper: bump compat for BioSequences to 3, (keep existing compat)

#36 github-actions[bot] closed 1 year ago
1
Allow chain id to be assigned with chainid!()

#35 gusennan closed 2 years ago
5
CompatHelper: bump compat for MetaGraphs to 0.7, (keep existing compat)

#34 github-actions[bot] closed 2 years ago
0
Secondary Structure Information

#33 emrekuecuek closed 1 year ago
7
Multiple selection and Merge Selection

#32 Wang-Lin-boop closed 3 years ago
5
CompatHelper: bump compat for "BioSymbols" to "5"

#31 github-actions[bot] closed 3 years ago
1
CompatHelper: bump compat for "DataFrames" to "1.0"

#30 github-actions[bot] closed 3 years ago
1
CompatHelper: bump compat for "DataFrames" to "0.22"

#29 github-actions[bot] closed 3 years ago
1
Add readmultimmcif, writemultimmcif functions

#28 marcom closed 3 years ago
2
Tab completion in the REPL for MMCIFDict and MMTFDict

#27 marcom closed 3 years ago
2
Add ProteinStructure constructors from MMCIFDict and MMTFDict

#26 marcom closed 4 years ago
2
Add MMCIF reading and writing with gzip compression

#25 marcom closed 4 years ago
3
Add get(mmcif, key, default) method for MMCIFDict.

#24 marcom closed 4 years ago
4
MMCIF reader parsing mistakes, some keys are missing / corrupted

#23 marcom closed 4 years ago
3
Suggestion: Make structural elements mutable

#22 amaurypm opened 4 years ago
7
CompatHelper: bump compat for "BioAlignments" to "2.0"

#21 github-actions[bot] closed 4 years ago
1
CompatHelper: bump compat for "BioSequences" to "2.0"

#20 github-actions[bot] closed 4 years ago
1
CompatHelper: bump compat for "DataFrames" to "0.21"

#19 github-actions[bot] closed 4 years ago
1
CompatHelper: bump compat for "CodecZlib" to "0.7"

#18 github-actions[bot] closed 4 years ago
1
CompatHelper: bump compat for "RecipesBase" to "1.0"

#17 github-actions[bot] closed 4 years ago
2
Recipesbase compat

#16 mkborregaard closed 4 years ago
3
Request for symmetries

#15 abahm opened 4 years ago
2
Error using BioStructures, no "libz1" module found

#14 kool7d closed 4 years ago
2
Create a ContactMap from a BitArray

#13 George3d6 closed 5 years ago
3
Allow truncated MODEL line in PDB files

#12 tanhevg closed 5 years ago
4
BioStructures fails to parse certain PDB files from SCOPe/ASTRAL archive

#11 tanhevg closed 5 years ago
1
Cap Documenter.jl to 0.19 on Travis

#10 mortenpi closed 5 years ago
0
Visualisation of contact and distance maps

#9 jgreener64 closed 6 years ago
1
Fix deprecations

#8 femtocleaner[bot] closed 6 years ago
1