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Currently, reasoning results are maintained even if the phylogenies change. Whenever the phylogeny changes, the reasoning results should be deleted so that re-reasoning is required
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I am not quite sure how this works, but at least two phylogenetic analyses of Piophilidae have been conducted in the past few years. One is a MSc thesis that never made it to publication, but is avail…
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Pyron, R. A., S. R. Ganesh, A. Sayyed, V. Sharma, V. Wallach, and R. Somaweera. 2016. A catalogue and systematic overview of the shield-tailed snakes (Serpentes: Uropeltidae). Zoosystema 38:453-506.
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@lizzieinvancouver I have added the code for the family level [Stan](https://github.com/lizzieinvancouver/pmm/blob/master/analyses/stan/phylogeny_family_cholesky.stan) and associated [R code](https://…
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@MoralesCastilla @lizzieinvancouver mentioned you are trying to plot family names on the tips of your tree.
In case it is helpful, this is how I ended up labeling my tree in the end. I used the g…
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is there a way to create a phylogeny from clustering structures rather than sequences?
I've successfully run:
```
foldseek createdb example/ db
foldseek search db db aln tmpFolder -c 0.8
fol…
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# The problem
I am developing a model in which I observe data x under the model M(θ) with parameter θ, and know that the data x satisfy condition C.
I wish to perform inference under the conditi…
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Hi Theo, I always thank you for your great products. Now I'm developing a web app using Taxonium Component, and I have the following specific questions.
1. Can we change the default color of branch…
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Error caused by providing `segs_loh` (ER3 in ovarian visium dataset)
```
Building phylogeny ..
Mem used: 0.517Gb
Using 9 CNVs to construct phylogeny
Aggregate function missing, defaulting to 'l…
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the standard should include some way to allow for multiple entries for a single agent (id) at different times. One way would be to have a 'sample_time' field which indicates the time when the data on …