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Description: I propose adding a new function molecular_weight() to the BioSequences package that calculates the average or monoisotopic molecular weight of a protein or nucleic acid sequence. The func…
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So we saw in Genome Wide Association Studies (GWAS) that >80% of predictions did not hold up to biological validation. Now connectomics is a young field for which even the biology hasn't been figured …
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#### Introduction
I am a new PhD Student at the Walter and Eliza Hall institute in Melbourne, Australia. My project is based around methods and tools for the analysis of DNA methylation in long reads…
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Please provide as much information as you can:
* **GO term ID and Label**
This term is problematic in 2 ways.
1) it's a single step process (phospholipase activity)
2) It's positioned under …
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hi, could please help how to make fix length sequence?
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From @cmungall : Only just saw this.
I would have said use the species specific proteins with IDs from uniprot
- clear SOP
- uniprot identifiers are well understood, no need for an additional l…
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Reactome
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P62979
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P62987
About 90 annotations for both spanning many processe…
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This thread breaks out the discussion from #31 into a separate thread about how we should handle residue replacement.
I would like to propose we work toward having pdbfixer use three possible modes f…
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I am trying to incorporate non-canonical amino acids by the applyMutation() function. Is there a protocol to achieve this?
The pdb is added in the template library and also in the 'proteinResidues'…
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Hello everyone,
I've been using ms-gf+ for many years without any problem. However, recently on tmt data it's staying stuck at 0%.
below is a log example (running for 2 hours with 0% progress):
M…