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BioJulia
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BioSequences.jl
Biological sequences for the julia language
http://biojulia.dev/BioSequences.jl
MIT License
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PFM just accepts vectors?
#310
felipe-mansoldo
opened
1 month ago
0
Upgrade CI
#309
jakobnissen
closed
3 months ago
1
Flip sticker
#308
jakobnissen
closed
3 months ago
0
Add new ncbi translation code
#307
camilogarciabotero
closed
3 months ago
2
Drop CI for MacOS Julia 1.5
#306
jakobnissen
closed
4 months ago
0
Precompute ExactSearchQuery faster
#305
jakobnissen
closed
4 months ago
1
Update `ispalindromic`
#304
jakobnissen
closed
6 months ago
1
`ispalindromic` with respect to `reverse` or `reverse_complement`?
#303
Seelengrab
closed
6 months ago
6
A strange behavior in approximate searches
#302
panxiaoguang
closed
7 months ago
4
Update docs with recipes pages
#301
jakobnissen
closed
8 months ago
1
Document string literal macro
#300
jakobnissen
closed
9 months ago
1
How should one search for ORFs?
#299
jakobnissen
opened
11 months ago
5
Update issue and PR template to match BioJulia guidelines
#298
jakobnissen
closed
11 months ago
0
add predicate method and tests
#297
camilogarciabotero
closed
11 months ago
1
Create and export a generic test biosequence
#296
jakobnissen
opened
11 months ago
0
Get this package back into PkgEval
#295
jakobnissen
closed
11 months ago
3
Run CI on Julia 1.5
#294
jakobnissen
closed
11 months ago
1
Bump Julia compat to 1.6
#293
jakobnissen
closed
11 months ago
2
[RFC]: Add functions `guess_parse` and `guess_alphabet`
#292
jakobnissen
opened
11 months ago
4
Do not fail CI if codecov falls
#291
jakobnissen
closed
11 months ago
1
Define compat for Random
#290
jakobnissen
closed
11 months ago
1
Consider making Random a weak dep
#289
jakobnissen
opened
11 months ago
1
Allow translation of LongSubSeq
#288
jakobnissen
closed
1 year ago
1
Remove downstream BioMakie CI
#287
jakobnissen
closed
1 year ago
1
Bump Documenter to 1.0
#286
jakobnissen
closed
1 year ago
2
A few fixes for tests
#285
jakobnissen
closed
1 year ago
1
Feature: concatenate bases with sequences
#284
BioTurboNick
closed
1 year ago
4
Fix tests
#283
jakobnissen
closed
1 year ago
1
WIP: Kmers.jl compatibility
#282
jakobnissen
opened
1 year ago
3
Decode nocheck
#281
jakobnissen
closed
1 year ago
1
Improve heuristics of translating ambiguous nucs
#280
jakobnissen
closed
1 year ago
1
Can we skip check in `decode`?
#279
jakobnissen
closed
1 year ago
0
Error when translating gaps
#278
jakobnissen
closed
1 year ago
1
Translation Issue arising from `isambiguous(DNA_Gap) == false`
#277
chelate
opened
1 year ago
2
domain name of this repo should be updated
#276
ctarn
closed
1 year ago
4
Use lowercase in DNA sequences
#275
ruysan
closed
1 year ago
1
Bump version to v3.1.4
#274
jakobnissen
closed
1 year ago
1
Migrate from SnoopPrecompile to PrecompileTools
#273
timholy
closed
1 year ago
1
Update URLs from biojulia.net to biojulia.dev
#272
kescobo
closed
1 year ago
0
Fix behavior of iterate on indices <= 0
#271
cjprybol
closed
1 year ago
5
Add guessparse function
#269
jakobnissen
opened
1 year ago
3
Record type inference
#268
cjprybol
opened
1 year ago
3
Improve error when mis-encoding LongDNA from byte-like inputs
#267
jakobnissen
closed
1 year ago
1
Improve error message on encoding error
#266
jakobnissen
closed
1 year ago
1
Remove references to Random.GLOBAL_RNG
#265
jakobnissen
closed
1 year ago
1
Allow translation of sequence views
#264
jakobnissen
closed
1 year ago
2
Translate subsequence
#263
jakobnissen
closed
1 year ago
0
New Feature: Molecular weight calculations for BioSequences
#262
benjaminlozanow
opened
1 year ago
8
Fix bug in zero_offset! called when materializing seqview
#261
jakobnissen
closed
1 year ago
1
Converting a LongSubSeq to LongSequence can give weird results
#260
ian-small
closed
1 year ago
1
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