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BioJulia
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BioSequences.jl
Biological sequences for the julia language
http://biojulia.dev/BioSequences.jl
MIT License
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Stop pirating BioSymbols
#259
jakobnissen
closed
1 year ago
1
Fix typo
#258
cossio
closed
1 year ago
1
Add SnoopPrecompile
#257
jakobnissen
closed
2 years ago
1
Indexing with bool or integer vector does not work with seqview
#256
jakobnissen
closed
2 years ago
1
Improve robustness of rand tests
#255
jakobnissen
closed
2 years ago
1
Vbump
#254
jakobnissen
closed
2 years ago
1
Various small doc fixes
#253
jakobnissen
closed
2 years ago
1
Add doctests to CI
#252
jakobnissen
closed
2 years ago
2
FASTA module not defined
#251
dinesh110598
closed
2 years ago
1
Add rand!([::AbstractRNG], ::LongSequence, [::Sampler]) methods
#250
jakobnissen
closed
2 years ago
2
Implement rand!
#249
jakobnissen
closed
2 years ago
1
Improve hasinterface(::Type{BioSequence})
#248
jakobnissen
closed
2 years ago
1
CenteredSequence{A} type for comparing short reads padding with AA_Gap
#247
gszep
opened
2 years ago
8
Reset Julia compat to v1.5
#245
jakobnissen
closed
2 years ago
1
Use naive hash fallback for BioSequence
#244
jakobnissen
closed
2 years ago
2
Design of hash(::BioSequence). What to do?
#243
jakobnissen
opened
2 years ago
18
Schedule method for removal
#242
CiaranOMara
closed
2 years ago
4
WIP: Add tryparse
#241
jakobnissen
opened
2 years ago
1
Cosmetic changes in constructors
#240
jakobnissen
closed
2 years ago
1
Use codeunits over unsafe_wrap
#239
jakobnissen
closed
2 years ago
1
Add tryencode and trydecode
#238
jakobnissen
opened
2 years ago
2
Doctests
#237
CiaranOMara
closed
2 years ago
1
Documentation for `findall` method
#236
CiaranOMara
closed
2 years ago
2
Fix ambiguity errors
#235
jakobnissen
closed
2 years ago
3
Allow join to work with BioSymbol
#234
jakobnissen
closed
2 years ago
1
Add iterate method for Alphabets
#233
TransGirlCodes
closed
2 years ago
2
`Base.eltype(::Type{<:Alphabet})` violates `eltype` docstring
#231
jakobnissen
closed
2 years ago
2
`join(LongRNA{2}, (RNA_A,))` should work
#230
jakobnissen
closed
2 years ago
0
Sequence hashing: Bugfix and slight simplification
#229
jakobnissen
closed
2 years ago
2
Fix small errors
#228
jakobnissen
closed
2 years ago
2
🐛-fix iscanonical
#227
TransGirlCodes
closed
2 years ago
1
🐛 in iscanonical / canonical
#226
TransGirlCodes
closed
2 years ago
7
🐛 in iscanonical / canonical
#225
TransGirlCodes
closed
2 years ago
2
Add tryparse(::BioSequence, s::AbstractString) or similar
#224
jakobnissen
opened
2 years ago
3
[FR] add `Query` versions for `Base.count`
#223
BeastyBlacksmith
opened
2 years ago
0
What happened to DNAMer?
#222
JokingHero
closed
2 years ago
1
Loosen search iterator
#221
CiaranOMara
opened
2 years ago
3
Add `findall` method
#220
CiaranOMara
closed
2 years ago
2
add an `ispermitted` for Alphabets?
#219
TransGirlCodes
opened
2 years ago
3
Add `findall` method
#218
CiaranOMara
closed
2 years ago
6
Implement `findall`
#217
jakobnissen
closed
2 years ago
2
LongDNA, LongRNA "not defined"
#216
fpmenninger
closed
2 years ago
5
findnext, findprev broken ... possible to add findall?
#215
fpmenninger
closed
2 years ago
4
Correct Julia compatibility entry
#214
CiaranOMara
closed
2 years ago
1
Small internal refactors
#210
jakobnissen
closed
2 years ago
1
TagBot trigger issue
#209
JuliaTagBot
closed
2 years ago
11
Fix bugs in minimal Alphabet interface example
#208
jakobnissen
closed
2 years ago
1
Fix issues from v3/master merge
#207
jakobnissen
closed
2 years ago
2
Version 3 updates
#206
TransGirlCodes
closed
2 years ago
4
CompatHelper: bump compat for BioSymbols to 5, (keep existing compat)
#205
github-actions[bot]
closed
2 years ago
0
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