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Hi,
I'm currently trying to install Prokka, but as the website for Aragorn is down, this fails. Below is the readout.
Is there an alternative way for me to install Prokka?
I'm using a MacBoo…
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Hi
I am getting following error while running dimond for eggnog-mapper.
/g/data/pq84/mano/programs/miniconda3/envs/eggnog-mapper/bin/diamond blastp -d '/g/data/pq84/mano/programs/miniconda3/envs…
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#Check in script to your class GitHub repository and run on zcluster
Open new issue on class GitHub repository recording link to Canu script, exact command used to submit job, and GitHub revision of …
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I am new to bioinformatics field and I wanted to try prokka so I installed it and it says I have to run `prokka --setupdb` during that it says
`Error: File existence/permissions problem in trying to…
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Hello, I am using Roary to generate a pan-genome with 682 .gff files obtained from Prokka.
The Roary command I'm using is python3 roary_plot.py --label mytree.newick the tree made by these command is…
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Hello all,
I have annotated a number of genomes with Prokka which they contain a gene of interest in their annotated files. However after Roary analysis (-i 80 and -cd 90) the gene is not present i…
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We are trying to install and run prokka in our Linux system but we have plenty of errors. After solving some problems with conda and perl versions we get this error message:
Could not run command: …
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I've been running metawrap binning with the the 3 tools while metabat2 ran perfecttly with maxbin2 and concoct it ran 168 hours and did not finished I checked for the maxbin2 and I found the maxbin2_o…
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I have around 300 genome dataset and I am trying to run roary on prokka gff files using 8 threads. Its already more than 10 days that it is running. Are there any suggestions to make it fast?