-
Hi Taoliu,
I am comparing two transcription factor's peaks. I analyzed unique peaks, meaning peaks that had no overlap (0 overlapping bases) between the two TFs. I was also interested in differenti…
-
Wizard (or cards) appears after the user clicks the Get Started button:
- [ ] Add three, stubbed out, simple, initial cards -- one for genes, one for enrichment, one for network
-
http://doi.org/10.1101/069096 (also http://biorxiv.org/content/early/2016/08/11/069096 because the DOI isn't working for me)
**At a glance:** Uses a pretrained DeepSEA model (#13) to filter and group…
-
Is it possible to integrate the search for multiple TF? possibly all from TRANSFAC database. I am particularly interested in human ones.
-
Initial group info you provided:
-----------------
| Name | Department/Program | Expertise/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Samantha Sch…
-
Dear Owen,
This time I have a question about the peaks2genes script. I was wondering about the peak values (second column) of the output .csv files. How one should implement these values? It seems th…
-
I have just started exploring use of DMRcate for DMR detection but have concerns about the approaches dmrcate offers for ranking DMRs. DMRcate offers Fisher's combination, Stouffer's combination, and …
-
Hi, I am running the Scenic+plus pipeline with Zebra fish and I am getting `Unable to load annotation for custom` warnings when I run `run_pycistarget`
All databases created specifically for Zebra …
-
-
Hi,
First, thank you for this wonderful package and documentation.
I am working on finding a differential loop calling for my 4 samples (8 reps) data using diffloop and below is my loopobject
`…