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Jumitti
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TFinder
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
https://tfinder-ipmc.streamlit.app/
MIT License
9
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15
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Minor improvements
#72
Jumitti
closed
1 day ago
0
Beta
#71
Jumitti
closed
1 day ago
0
Fix bug get_dan_sequence
#70
Jumitti
closed
1 week ago
0
Beta
#69
Jumitti
closed
1 week ago
0
Genome assembly
#68
Jumitti
closed
1 week ago
0
Set error message for NCBI
#67
Jumitti
closed
1 month ago
0
Set error message for NCBI
#66
Jumitti
closed
1 month ago
0
Set error message for NCBI
#65
Jumitti
closed
1 month ago
0
Fix transcripts extractions
#64
Jumitti
closed
2 months ago
0
Reverse and complement as an option
#63
Jumitti
closed
2 months ago
0
Fix table, deprecation reverse and complement analysis
#62
Jumitti
closed
2 months ago
0
Fix server issues
#61
Jumitti
closed
4 months ago
0
Update README.md
#60
Jumitti
closed
4 months ago
0
[FEATURE] multiple TF search
#59
Darius-bit
opened
5 months ago
4
Mirror links
#58
Jumitti
closed
5 months ago
0
Beta
#57
Jumitti
closed
5 months ago
0
Fix email export
#56
Jumitti
closed
5 months ago
0
Fix some bugs
#55
Jumitti
closed
5 months ago
0
Streamlit 1.26 and above supported, Streamlit Local supported
#54
Jumitti
closed
5 months ago
0
Update
#53
Jumitti
closed
9 months ago
0
Update
#52
Jumitti
closed
9 months ago
0
Update
#51
Jumitti
closed
9 months ago
0
Update
#50
Jumitti
closed
9 months ago
0
Beta for PREPRINT
#49
Jumitti
closed
9 months ago
0
Correction of variants
#48
Jumitti
closed
10 months ago
0
Update
#47
Jumitti
closed
11 months ago
0
Beta
#46
Jumitti
closed
11 months ago
0
Beta
#45
Jumitti
closed
11 months ago
0
Fix JASPAR API
#44
Jumitti
closed
11 months ago
0
Update requirements.txt
#43
Jumitti
closed
11 months ago
0
Beta
#42
Jumitti
closed
11 months ago
0
PWM detection issue? [HELP] [QUESTION]
#41
EdPym
opened
11 months ago
2
improvement and preparation for upgrade
#40
Jumitti
closed
11 months ago
0
Improvements, direction and strand of pattern found
#39
Jumitti
closed
11 months ago
0
Toggle and preparation for next huge update
#38
Jumitti
closed
11 months ago
0
[BUG] Wrong Gene ID leads to an error and not a warning
#37
Jumitti
closed
1 year ago
1
Bump pillow from 9.5.0 to 10.0.1
#36
dependabot[bot]
closed
1 year ago
2
Minor fix and NM, NR, XM, XR allowed
#35
Jumitti
closed
1 year ago
0
Slice variant
#34
Jumitti
closed
1 year ago
0
Variant NM or XM allowed
#33
Jumitti
closed
1 year ago
0
Fix automatic and manual threshold
#32
Jumitti
closed
1 year ago
0
[BUG][QUESTION] Binding site prediction is dependent on sequence length?
#31
EdPym
closed
1 year ago
2
Documentation API in progress and minor fix
#30
Jumitti
closed
1 year ago
0
Beta
#29
Jumitti
closed
1 year ago
0
Beta
#28
Jumitti
closed
1 year ago
0
TFinder now operationnal
#27
Jumitti
closed
1 year ago
0
Beta
#26
Jumitti
closed
1 year ago
0
Presentation and resources
#25
Jumitti
closed
1 year ago
0
Correction of several bug and improvements
#24
Jumitti
closed
1 year ago
0
Individual motif accepts gap with . and -
#23
Jumitti
closed
1 year ago
0
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