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I added in the Blast fix from #31 which fixed the ss_residue error and now when I try any of the examples it seems the atab file isn't being generated/saved correctly?
My call is here:
HYDRA_FULL_…
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I successfully installed the package and executed it for the protein-ligand complex using the following command on a system equipped with an NVIDIA GeForce RTX 4070 Ti:
python -m rf2aa.run_inferenc…
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Hello.
When running RoseTTAFold-All-Atom using the following input YAML config file, I observed that the inference code returned a `.pdb` file that contains a predicted protein structure with the f…
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Hi,
Excellent work! I am reading ProtSSN and trying to use it, but I have a few questions:
1) The input in downstream tasks is the entire protein, while the training set uses CATH domains. How do…
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(RFAA1) [2200012187@hr-6-6-login RoseTTAFold-All-Atom]$ python -m rf2aa.run_inference --config-name protein
/gpfs/share/home/2200012187/mambaforge/envs/RFAA1/lib/python3.10/site-packages/hydra/_inter…
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Great work!
I ran into a problem when I tried to run the run_single_protein_inference.py script. I couldn't find the trained model in the paper. Could you please tell me how to find it?
Thank y…
zzz14 updated
4 months ago
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/inference="similar to AA sequence:trusted.faa:gi|302750786|gb|ADL64963.1|"
should be :Genbank:ADLXXXXX.1
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Hello,
As per [this line](https://github.com/aqlaboratory/openfold/blob/main/openfold/model/evoformer.py#L649), when neither Deepspeed nor LMA is selected, the custom memory-efficient [kernel](http…
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### Description of feature
In the DDA/label-free workflow (perhaps in others as well), it would be useful to get an output of the identification results at the end of the search/inference/filtering p…
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I executed the following command in a container created from the provided Dockerfile:
```bash
micromamba run -n diffdock python -m inference --config default_inference_args.yaml --protein_ligand_c…