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### What is the title of the roadmap you are submitting?
Roadmap to Bioinformatics
### Roadmap Link
# Bioinformatics Roadmap
**0. Why Bioinformatics?**
- **What is Bioinformatics?** Bioinfo…
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To achieve smooth animation and/or ultrafast rendering, we would probably need WebGL. This is lower priority than the fundamental desired features of react-msaview (i.e. an integrated tool for navigat…
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We need to come up with appropriate test systems to evaluate the different methods.
The dataset should contain examples of:
- [ ] Identical sequences, different conformations
- [ ] Homologous s…
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@ConorFWild
The CHIKV upload flushed out a bug in the algorithm, as discussed [here in Slack](https://xchem-workspace.slack.com/archives/C069ZQUN9PY/p1709678447258599):
Bug: If something …
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I have observed negative bits score for some pairs of protein structures in an all-against-all comparison of a collection of structures. I don't understand how this is possible, because Smith-Waterman…
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The structural alignment algorithms currently implemented in biojava, **CE** and **FatCat**, have a common characteristic: they are **sequential**. This means that they assume that the topology of the…
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Suggestion:
Essentially each entry of the list would be treated as a disconnected
component and internally handled as if it was a separate chain. This
would enable us to handle oligomers (for SM …
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### Contribution guidelines
- [X] I've read the [contribution guidelines](https://github.com/squidfunk/mkdocs-material/blob/master/CONTRIBUTING.md) and wholeheartedly agree
### I've found a bug and …
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Recently I tried to use MDTraj to analysis my system which is a ligand combine with a GPCR protein.Here I want to use the CA atom of GPCR protein to do the alignment and calculate the RMSD of the liga…