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Hi there!!
First of all, thanks for developing an open source tool in R that can handle such complex datasets as those recurrent in proteomics and mass spec.
I am working with the MaxLFQ datase…
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Hi all,
I made a pull request with three exemplary annotations for MSI data to start a discussion: https://github.com/bigbio/proteomics-metadata-standard/pull/450
Here are some thoughts about t…
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There are substantial differences between SynergyFinderPlus ([www.synergyfinder.org](http://www.synergyfinder.org/)) and SynergyFinder2 (https://synergyfinder.fimm.fi/). For assessing the degree of sy…
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Hi,
I am executing the portal_client tool (with my iHMP username and password) to download the files using a manifest file as follows:
portal_client -m hmp_cart_e0473170e2.tsv --endpoint-priority FA…
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@timosachsenberg , Oliver said you might have some Galaxy workflows that used the output of CTDConverter?
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# Abstract
Unipept is an ecosystem of tools for the taxonomic and functional analysis of (meta)proteomics datasets. The Unipept project aims to be an easy-to-use and very accessible tool by providing…
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Hello, and thank you in advance for any nudges, help or discussion.
I am trying to run alignment on three large Proteomics datasets using Obiwarp. They're each about 800 Mb. I am fairly familiar wi…
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Project Lead: @evelyngreeves
Mentor: @annefou
Welcome to OLS-5! This issue will be used to track your project and progress during the program. Please use this checklist over the next few weeks as …
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There are a number of genes (and proteins?) where the user just won't find any results. In the type-head, we should should that we know it exists in the world... but that we don't have data. Something…
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Hey,
I have a question regarding the three normalization methods that you applied. Actually it makes a difference whether to apply for example SL on raw data and log2 the data for visualization, or t…