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# Abstract
Unipept is an ecosystem of tools for the taxonomic and functional analysis of (meta)proteomics datasets. The Unipept project aims to be an easy-to-use and very accessible tool by providing…
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We could publish in either of these three journals
- [Frontiers in Plant Science](https://www.frontiersin.org/journals/plant-science)
- [Plant Physiology](http://www.plantphysiol.org/)
- [Plant Met…
Thyra updated
3 years ago
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Create a section for each environment that helps a user transition to using the tool/environment in AnVIL
┆Issue is synchronized with this [Jira Story](https://ucsc-cgl.atlassian.net/browse/ANVIL-8…
kozbo updated
3 years ago
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Hi all,
I made a pull request with three exemplary annotations for MSI data to start a discussion: https://github.com/bigbio/proteomics-metadata-standard/pull/450
Here are some thoughts about t…
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There are substantial differences between SynergyFinderPlus ([www.synergyfinder.org](http://www.synergyfinder.org/)) and SynergyFinder2 (https://synergyfinder.fimm.fi/). For assessing the degree of sy…
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@jpfeuffer sometimes the pipeline fails in the id part because of the peak-peaking step by the ThermoRawFileParser. Would be great to "restart" the pipeline, same parameters but with the openms peak p…
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Hi there!!
First of all, thanks for developing an open source tool in R that can handle such complex datasets as those recurrent in proteomics and mass spec.
I am working with the MaxLFQ datase…
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Let's put datasets here. In order to avoid confusion, the dataset refers to curated data from the database which we can use in ml and AI models. Database refers to Clinvar where they have raw data onl…
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Hello, and thank you in advance for any nudges, help or discussion.
I am trying to run alignment on three large Proteomics datasets using Obiwarp. They're each about 800 Mb. I am fairly familiar wi…
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Hi,
first, thank you for providing this great tool!
I have a LFQ dataset of 175 samples x 5787 proteins, log2 transformed protein abundance with ~ 6% missing values (I've filtered out proteins w…