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- Describe the issue or question:
Hi, I got an error when running DIA runs of peptidomics.
Below is the error:
System OS: Windows 10, Architecture: AMD64
Java Info: 11.0.9.1, OpenJDK 64-Bit Server…
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Dear
we are trying to run fragPipe (LFQ) with DDA file from thermo but we are getting error.
please see below the log
we checked all the possible issues but we were not able to solve it
many t…
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I utilized MSFragger-PD for performing an open search on a set of 12 files, totaling 23 GB in size. Remarkably, the close search of these identical files using SEQUESTA completes within approximately …
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- Describe the issue or question:
Hello. I recently uploaded/unzipped Fragpipe on a high-performance computing cluster hosted by my university. When running on a Virtual Desktop, the MSBooster step f…
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Hi,
I got the following error "ERRO[08:36:50] Cannot decode packed binary. XML syntax error on line 3631: unexpected EOF", and fragpipe stopped. I have attached the whole log file for you. I checke…
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Hi Team Fragpipe,
I've recently updated to Fragpipe V17.0, where I try to use "DIA_Speclib_Quant" workflow. in this case, I just want the library.tsv file.
There seems to be some error with the …
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- Describe the issue or question:
Batmass-IO version 1.28.12
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.nustaq.serialization.FSTClazzInfo…
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It seems there is a limit on individual sumbitted mgfs (I am not sure how big, I've been told by collaborator it's 2GB per file, but I cannot find it).
Is there some simple way to extend that limit…
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- Describe the issue or question:
As attached the log file, it stopped at somewhere ask if the peptideprophet is run. However, this function is enabled and i have tried different raw data, but same e…
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- Describe the issue or question:
java.lang.OutOfMemoryError: Java heap space
java.lang.OutOfMemoryError: Java heap space
Failed in checking D:\FragpipeTest_HCT116\23092021_Fusion_Gautam_NT1.raw. W…