-
I'm leaving these comments as an 'issue' in response to the pdf sent out on 17/04/2020 (commit `3704689a2b294ee9b2ac67c441362d6820092cf0`)--it's a more detailed response than what we talked about at l…
-
I made these suggestions separate from the material in my PR (#30) because they seemed more discussion based or bigger than anything I modified in the PR.
# GENERAL COMMENTS
A general note is so…
-
here's a first draft of [softclock](https://github.com/tyleretters/softclock/blob/main/lib/Softclock.lua
), based on @catfact's [mockup](https://gist.github.com/catfact/614fcea7bd1c6d1fe1cbdd57b42115…
-
Hi everyone,
I am trying to make an SFS using ANGSD but got a bit confused by the ancestral state.
My case is ddRAdSeq pair-end reads of a fish. Samples are generated as fq.gz for read1 and rea…
-
Dear Thierry
I have used Radiator befire but now running the latest release on a new dataset fails in step 12 filter_hwe with the follwing message:
"Execution date@time: 20200318@1453
Interactive m…
-
Stemming from my casual realization that there are 2 ‘dementia’ in EFO 3, one from HP and one from MONDO, with two significantly different lineages, see https://github.com/EBISPOT/efo/issues/15#issuec…
-
I think a really useful feature would be the ability to receive MIDI clock and set the start and end time to a user definable grid when the corresponding key on the keypad (or equivalent MIDI message)…
-
Hi Thierry,
I am attempting to use radiator::filter_rad to filter a populations.snps.vcf file from Stacks, but I am consistently getting an error in ''generating individual stats" and then I do not…
-
I deduplicated my files in `bismark`:
> The script deduplicate_bismark is supposed to remove alignments to the same position in the genome from the Bismark mapping output (both single and paired-en…
-
Hi Thierry,
A few small bugs I've noticed with filter_rad() in interactive mode:
-Any filter that removes samples/individuals causes failure in the next filtering step:
```
Error: Column `MISS…