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Hi everyone, I am trying to use the pyscenic workflow to infer grn on my 10X scRNA dataset. I completely followed the demonstration workflow posted on SCENICprotocol cancer data sets using SKCM scRNA …
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Hi,
My expression matrix has several same gene names within it. When I run get_regulons(Aucell.loom), an error occured as follows:
`In open_loom(opt$input_loom) :
Loom specification version 2 or …
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Dear team
I keep getting the error below in the last step of pyscenic pipeline. I found it was raised before but the solutions suggested didn't work. There seem to be some incompatibility in the …
Sa753 updated
1 month ago
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Dear All,
I would like to set default view as UMAP instead of tSNE,
Where do I change this parameter?
Many Thanks
Paolo
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Dear SCENIC team,
Thanks for the great tool SCENIC!
I have encountered an error when i try to analyze my 10X genomics scRNAseq data followed the instruction "https://github.com/aertslab/SCENICprotoc…
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Hi Team,
Thank you for generating this package! I have a slight issue in regards to the motif nomenclature. I understand that the Motif library has been generated from multiple databases (and …
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Hi! I found your finding very interesting. I wonder if you can provide modules.RData for modules. I was trying to go over the whole process to get the cell state values.
Thank you!
Peiyao
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I've been seeing my `pyscenic ctx` gets terminated in the middle of the run. My mystery is that it doesn't throw any error message as shown below:
```bash
$ singularity shell -B path/to/work…
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I run "runSCENIC_1_coexNetwork2modules(scenicOptions)" and runSCENIC_2_createRegulons(scenicOptions)" successfully without reporting an error. However, running SCENIC_3_scoreCells as "scenicOptions
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## Overview
Task list for development priorities for domino
## Intended Outcome
Serves as a central resource for highlighting developments or bugs to address and sharing them with the team wh…