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Hello,
Thanks for this helpful package. I've found it very useful over the past couple years.
I recently got a Mac with an M3 processor (previously, I was using a Mac with an i5 processor). I am…
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https://github.com/RSGInc/national_freight_model/issues/20
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### Resources/Goals
- `h5dump` - command line access to hdf5 databases
- `h5dump --help` lists command line option ("-- or - switches)
- `?h5read` show help file in R
- How do we find what is a…
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I am trying to install sleuth after installing the devtools and rhdf5 packages.
The commands that i am using are as follows:
`devtools::install_github("pachterlab/sleuth")`
The error msg which i…
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From #33 and pull request #309, though `collate_tpms.R` sorts its inputs by ORF (now optional) the inputs are already sorted by the time they come to `collate_tpms.R`:
```console
$ grep \> riboviz…
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The aim is something along the lines of https://github.com/riboviz/riboviz/issues/237
A function like GetAllCodonPosCounts would be useful:
- Repeat for all genes - wrap GetGeneCodonPosReads1dsnap…
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After seeing hdf5 issue fixed I have another problem, when I run
```R
so
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Vince (@vjcitn) suggested:
> One could imagine the show method for SummarizedExperiment checking to see if there is evidence of HDF5 in the assay and if it finds it, it adds a line 'To serialize, …
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It's not implemented in the original package. Reading a hdf5 file with python datetime data field will result a warning and that data field been set to NA.
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Hi,
When I try to open an h5ad file with `H5Fopen(filename)` i get "File accessibility. Unable to open file".
I'm using:
```
R version 4.1.0 (2021-05-18) …