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Hello @Elena-TT and @jc-huetter,
I am wondering if it's possible to obtain the already processed object containing the data. This would hopefully facilitate running the analysis scripts in the scR…
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Hi,
I am trying to follow your work with my scRNA seq analysis, and I am curious about how did you calculate the correlation of module and AD in the fig.8 b and c.
Thank you so much for your help.…
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Hi,
I have multiple slices from 6 patients.
For ST data, I divided them into 3 groups (2 sample for each group). And I also integrate scRNA-seq by groups.
For CARD deconvolution, can we proces…
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Hi, zqyhyunbin :+1:
It's a really good job,
I learn the code you supply and you may only give the QC code
How you combine the Bulk-seq with scRNA-seq is not clear
could you please tell me how yo…
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thank you so much for this great work!!!
could you please provide more train datasets about ovarian cancer ?
i am so pleased that you would reply to this messages
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Dear Omicverse Team,
I want to congratulate you on the outstanding work you've done with Omicverse!
I am writing to seek your assistance with an issue I encountered while trying to deconvolute b…
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Where is the defualt human scATAC-seq human data file I can use for scenicplus? Is there a defualt file for mouse?
I want to be able to run grnboost, RCisTarget, and AUcell analaysis by providing g…
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Thanks for make such a good work! It definately makes scRNA-seq DEGs analysis eaiser!
And there, I just wanna know for sure about the avg_logFC in the result. Is that just one of log2 or log10, or …
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Hello dear author,
I used this package for my scRNA-seq data analysis, now I wonder if I can use the function "BuildSNNGraph" on my DNA methylome data (data frame: genome_bin * cell_ID)? My purpose…
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Dear team,
Thanks a lot for providing scGPT for biological researchers. You provide a tutorial for perturbation prediction using Adamson or Norman's datasets. However, I am still confused about h…