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YMa-lab
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CARD
GNU General Public License v3.0
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One cell corresponds to multiple spots in function CARD_SCMapping
#81
lvmt
opened
2 weeks ago
0
why the singlecell T celltype cannot deconvolution with 10x spatial mouse data, the SpatialFeaturePlot showing Cd8a express lots of spot
#80
honghh2018
opened
1 month ago
1
Error in norm_cords$x - min(norm_cords$x) : non-numeric argument to binary operator
#79
krigia
opened
2 months ago
1
Single Cell mapping error
#78
lindsdudley
opened
2 months ago
0
There are no common gene names in spatial count data and single cell RNAseq count data
#77
krigia
opened
2 months ago
0
How to view informative genes for each cell type
#76
ghost
opened
2 months ago
1
How to add CARD result to Seurat object
#75
GouQiao
opened
2 months ago
2
Multiple slices
#74
GouQiao
opened
2 months ago
1
Put CARD on Bioconductor
#73
estellad
opened
2 months ago
3
The CARD spatial plots are squished compared to the slide image
#72
ashishjain1988
closed
2 months ago
5
Rotate CARD plots?
#71
hcjarnagin
closed
1 month ago
3
Error Error in norm_cords$x - min(norm_cords$x) : non-numeric argument to binary operator
#70
krigia
opened
3 months ago
1
sc and spatial count Matrix are correctly formatted but createCARDObject function returns error
#69
krigia
opened
3 months ago
2
Using single cell data from different sources as input
#68
Qirongmao97
opened
3 months ago
1
Error in CARD installation in MacOS
#67
krigia
closed
3 months ago
5
Is it possible to install it with conda?
#66
ghost
closed
3 months ago
4
image coordinates and title size
#65
chrkuo
closed
3 months ago
3
Imputation expression levels in plot
#64
jebard
opened
4 months ago
3
Basis matrix is different for the same snRNA-seq but different spatial samples
#63
Qirongmao97
opened
5 months ago
2
Where is the marker gene list of MOB and Mouse hippocampus data
#62
xiangpin
opened
6 months ago
0
The area annotation of the MOB and PDAC spots
#61
raywzr
opened
8 months ago
0
CARD_SCMapping
#60
lindsdudley
opened
8 months ago
1
Error in CARD.visualize.gene
#59
lindsdudley
closed
7 months ago
0
inconsistency with DWLS vs. CARDS deconvolution
#58
chrkuo
closed
3 months ago
1
location of the deconvoluted spots
#57
chrkuo
opened
9 months ago
2
How to keep all the Spatial data?
#56
Smilenone
closed
3 months ago
3
Cannot Install CARD
#55
gucascau
closed
4 months ago
3
Batch effect
#54
yjkweon24
opened
10 months ago
0
Simulation dataset
#53
cristalliao
closed
4 months ago
4
Error Installing on Mac Monterey M1
#52
jamesboot
closed
4 months ago
5
CARD Object does not look like the original tissue
#51
chrkuo
closed
4 months ago
4
CreateCARDObject error
#50
chrkuo
closed
11 months ago
0
Score the gene set
#49
1JYL123
closed
11 months ago
2
Does CARD work using normalized (no raw) spatial and scRNA-seq count data?
#48
krigia
closed
11 months ago
1
Empty figure content when I run CARD.visualize.pie in R to generate a spatial pie plot
#47
krigia
closed
11 months ago
1
CARD.visualize.prop gives spots that are too large - cannot make smaller?
#46
corecontingency
closed
11 months ago
1
The weight of genes in different clusters
#45
Qirongmao97
closed
1 year ago
1
Can I use normalized expression data as sc_count
#44
kangjiajinlong
closed
1 year ago
1
Question about PDAC data provided in tutorial
#43
AnthonyX1an
closed
1 year ago
1
Question regarding the values in Proportion_CARD vs values seen in plot of CARD.visualize.prop
#42
LooLipin
closed
1 year ago
2
Error in CARD visualization of proportions
#41
ShraddhaRaghuram
closed
11 months ago
1
Issue of CARD object creation
#40
YangXuuu
closed
1 year ago
4
Overlay with H&E image
#39
amachadolopez
closed
1 year ago
2
Install error
#38
ti-spat
closed
1 year ago
2
borders for each dot
#37
LooLipin
closed
1 year ago
2
Error in running CARDref()
#36
YaobangWang
closed
10 months ago
4
statistic inference in Cpp
#35
hzaurzli
closed
1 year ago
1
error(attempt to select less than one element in get1index) when running CARD_deconvolution()
#34
cynthier
closed
1 year ago
5
How to choose a dominant cell type in one position of spatial transcriptomics data?
#33
pillar-github
closed
1 year ago
4
Question about single cell resolution mapping on multiple samples
#32
rohitarorayyc
closed
1 year ago
1
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