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It seems, graphmap have some problem with "align" flag. How to fix it ?
➜ bin git:(master) ✗ ~/Tools/EAGLER/release/eagler -x ont -t 40 /media/urbe/TOSHIBALAB/falconUnzip/SSPACED_P2/scaffolds.fas…
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```
CMake Warning at cmake/FindJava.cmake:54 (message):
regex not supported: openjdk version "1.8.0_101"
OpenJDK Runtime Environment (IcedTea 3.1.0) (Gentoo icedtea-3.1.0-r1)
OpenJDK 64-Bit Se…
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### Description
* seqan 3.0.1
* Compiler GCC7.5/8.4 : ICE
* Compiler GCC9.3 : `fatal error: template instantiation depth exceeds maximum of 900`
The following triggers an ICE when compiling t…
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I currently use an archive of the structure:
```
example_data/
├── 1024
│ ├── bins
│ └── reads
└── 64
├── bins
└── reads
```
where the `bins` and `reads` directory contain `64`…
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### Reported bugs
### Fixed issues
- [x] https://github.com/seqan/seqan3/pull/3060
- [ ] https://github.com/seqan/seqan3/pull/3080
### Tasks
- Monitor the [nightly documentation buil…
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Hi all,
I am testing RazerS3 with my data as it seems to be returning far fewer alignments than expected. I found that with many reads I am getting this error:
`/home/osboxes/seqan/include/seqa…
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Hello,
I've been trying to get pizzly to work with one our datasets and have run into some problems. I have been able to successfully complete each of the kallisto steps but when I attempt to run p…
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Due to copying a dna5 alphabet into a dna4 index the resulting indexing data structures are no longer completely correct. This will affect the mapping process (backtracking) in extremly rare cases.
…
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Hi @BenLangmead and rest of Bowtie team, Kevin here from MARCC.
We are trying to more closely follow releases. Issue #38 covered issues with compilation.
I was comparing the two commits, and it …
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Not an issue, just a question.
Since the update of SeqAn that now requires GLIBC 2.14 the binaries I have created no longer run on many of the production HPC environments that run Scientific Linux 6…