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pmelsted
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pizzly
Fast fusion detection using kallisto
BSD 2-Clause "Simplified" License
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Pizzly with single-end data
#46
andreyurch
opened
5 months ago
0
Max insert size from Kallisto
#45
MikeWLloyd
closed
1 year ago
2
Segmentation Fault
#44
jollymrt
opened
1 year ago
1
Provide a long option for `-k`
#43
nh13
opened
1 year ago
0
fusion locations
#42
jlgabre
opened
2 years ago
0
Because of dependence on Kallisto, is it necessary to trim?
#41
ahdee
opened
3 years ago
0
Bad Alloc error and no .hd5 file being generated
#40
rahul-yadav-supra
opened
3 years ago
0
Working version of pizzly available?
#39
mapostolides
opened
4 years ago
2
handling duplicated sequences in output.fusions.fasta
#38
racng
opened
4 years ago
0
scripts/flatten_json.py - too unspecific to have in /usr/bin
#37
smoe
opened
4 years ago
0
license of data files shipping in "test" folder?
#36
smoe
opened
4 years ago
0
"seqan::ParseError" debugging
#35
amwa
opened
4 years ago
0
"pizzly: Not enough arguments were provided"
#34
AmrR101
opened
4 years ago
1
pizzly splitcount 0
#33
igordot
opened
4 years ago
1
question on the confidence of the fusion gene transcripts
#32
maximillo
opened
5 years ago
0
Long read RNA seq
#31
OxPen
closed
5 years ago
1
Unknown error when attempting to run pizzly
#30
MichaelPisano
opened
5 years ago
1
using pizzly on Augustus predictions
#29
evolgenomology
opened
5 years ago
0
splitcount = 0
#28
mathieu-massaviol
opened
6 years ago
0
Long run time on very large RNAseq data
#27
chrisamiller
closed
6 years ago
2
Segmentation fault: 11
#26
ttamho
opened
6 years ago
1
could not find any transcript sequences check that the ids in the FASTA file and GTF file match
#25
tuan-tt
closed
6 years ago
0
Extracting reads/read pairs mapping to fusions
#24
virajbdeshpande
opened
6 years ago
0
Running with more than one file for left/right reads
#23
holtgrewe
opened
6 years ago
1
GTF file must be sorted in gene->transcript->exon order
#22
roryk
opened
6 years ago
0
pizzly cache format
#21
roryk
closed
6 years ago
1
pep8 fixes
#20
bgruening
opened
6 years ago
1
pizzly missing a fusion from SRR1659964
#19
roryk
opened
6 years ago
14
Update README with gene collapsing and insert size commands.
#18
roryk
opened
6 years ago
4
pizzly reports more fusions than expected
#17
roryk
closed
6 years ago
1
Error, could not find any transcript sequences
#16
ndaniel
opened
6 years ago
5
Failed in installing pizzly
#15
qindan2008
closed
6 years ago
3
Change license and add Bioconda pkg
#14
bgruening
closed
6 years ago
0
Notes and compiled download don't match
#13
lachlansimpson
opened
6 years ago
1
Make Error; unable to compile required .c file
#12
sowmyaiyer
closed
6 years ago
1
Non-printable characters (including ASCII 0) in fusion output FASTA sequences
#11
kreil
closed
6 years ago
3
How does pizzly work ?
#10
ahy1221
closed
7 years ago
1
Filtering criteria & downstream analysis
#9
leiendeckerlu
closed
6 years ago
3
segmentation fault
#8
kreil
closed
7 years ago
22
no fusion in output files
#7
doublehelixlf
closed
7 years ago
17
update test/reads_*.fastq.gz such that .1 and .2 are removed from reads ids
#6
ndaniel
opened
7 years ago
0
Insert size estimate by Kallisto
#5
uros-sipetic
closed
7 years ago
4
No fusion found
#4
bioinfo-dirty-jobs
closed
6 years ago
9
Installation Problem
#3
bioinfo-dirty-jobs
closed
7 years ago
3
False positive fusions and missed fusions
#2
ndaniel
closed
7 years ago
11
--cache index.cache.txt
#1
ndaniel
closed
7 years ago
2