pmelsted pizzly issues - Githubissues

pmelsted / pizzly

Fast fusion detection using kallisto

BSD 2-Clause "Simplified" License

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issues

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Pizzly with single-end data

#46 andreyurch opened 10 months ago
0
Max insert size from Kallisto

#45 MikeWLloyd closed 1 year ago
2
Segmentation Fault

#44 jollymrt opened 1 year ago
1
Provide a long option for `-k`

#43 nh13 opened 2 years ago
0
fusion locations

#42 jlgabre opened 2 years ago
0
Because of dependence on Kallisto, is it necessary to trim?

#41 ahdee opened 3 years ago
0
Bad Alloc error and no .hd5 file being generated

#40 rahul-yadav-supra opened 4 years ago
0
Working version of pizzly available?

#39 mapostolides opened 4 years ago
2
handling duplicated sequences in output.fusions.fasta

#38 racng opened 4 years ago
0
scripts/flatten_json.py - too unspecific to have in /usr/bin

#37 smoe opened 4 years ago
0
license of data files shipping in "test" folder?

#36 smoe opened 4 years ago
0
"seqan::ParseError" debugging

#35 amwa opened 4 years ago
0
"pizzly: Not enough arguments were provided"

#34 AmrR101 opened 5 years ago
1
pizzly splitcount 0

#33 igordot opened 5 years ago
1
question on the confidence of the fusion gene transcripts

#32 maximillo opened 5 years ago
0
Long read RNA seq

#31 OxPen closed 5 years ago
1
Unknown error when attempting to run pizzly

#30 MichaelPisano opened 6 years ago
1
using pizzly on Augustus predictions

#29 evolgenomology opened 6 years ago
0
splitcount = 0

#28 mathieu-massaviol opened 6 years ago
0
Long run time on very large RNAseq data

#27 chrisamiller closed 6 years ago
2
Segmentation fault: 11

#26 ttamho opened 6 years ago
1
could not find any transcript sequences check that the ids in the FASTA file and GTF file match

#25 tuan-tt closed 6 years ago
0
Extracting reads/read pairs mapping to fusions

#24 virajbdeshpande opened 6 years ago
0
Running with more than one file for left/right reads

#23 holtgrewe opened 7 years ago
1
GTF file must be sorted in gene->transcript->exon order

#22 roryk opened 7 years ago
0
pizzly cache format

#21 roryk closed 7 years ago
1
pep8 fixes

#20 bgruening opened 7 years ago
1
pizzly missing a fusion from SRR1659964

#19 roryk opened 7 years ago
14
Update README with gene collapsing and insert size commands.

#18 roryk opened 7 years ago
4
pizzly reports more fusions than expected

#17 roryk closed 7 years ago
1
Error, could not find any transcript sequences

#16 ndaniel opened 7 years ago
5
Failed in installing pizzly

#15 qindan2008 closed 7 years ago
3
Change license and add Bioconda pkg

#14 bgruening closed 7 years ago
0
Notes and compiled download don't match

#13 lachlansimpson opened 7 years ago
1
Make Error; unable to compile required .c file

#12 sowmyaiyer closed 7 years ago
1
Non-printable characters (including ASCII 0) in fusion output FASTA sequences

#11 kreil closed 7 years ago
3
How does pizzly work ?

#10 ahy1221 closed 7 years ago
1
Filtering criteria & downstream analysis

#9 leiendeckerlu closed 7 years ago
3
segmentation fault

#8 kreil closed 7 years ago
22
no fusion in output files

#7 doublehelixlf closed 7 years ago
17
update test/reads_*.fastq.gz such that .1 and .2 are removed from reads ids

#6 ndaniel opened 7 years ago
0
Insert size estimate by Kallisto

#5 uros-sipetic closed 7 years ago
4
No fusion found

#4 bioinfo-dirty-jobs closed 7 years ago
9
Installation Problem

#3 bioinfo-dirty-jobs closed 7 years ago
3
False positive fusions and missed fusions

#2 ndaniel closed 7 years ago
11
--cache index.cache.txt

#1 ndaniel closed 7 years ago
2