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For `pipelineCNA()` a synthetic baseline is calculated per-sample. This can be an issue when you have a large dataset and have to run single samples for computational reasons as the baseline is differ…
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@sjfleming Thanks for the great tool. I really appreciate for the amazing calculation.
When I used the tool for my 4 samples, I also met some problems.
**Q1: 3 different learning-rate for sampl…
GLLMU updated
1 month ago
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Hi ShouWen,
I'm wondering whether there is a simple way to add max_cells or max_molecules to the config files used for the MATLAB or python-based DARLIN pipelines. Tuning the read thresholds is usefu…
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I want to know where can I find “PBMC_merged.normal.subsample500cells.h5ad”，and I can not fint it in file named“20220531_PBMC_metadata.ipynb”.
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I am trying to use a Single Cell dataset from from one project to deconvolute a Bulk RNAseq dataset from a different project. When i run Squid I am getting an error when SQUOD.R is trying to create th…
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### Project short name: Covid19BALFLandscape
### Primary Wrangler:
Arsenios
### Secondary Wrangler:
Ida
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/1Ua…
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In this session, we will discuss potential projects to improve the _R/Bioconductor_ infrastructure for the analysis of large single-cell 'omics data sets. Projects can focus on any stage of the pr…
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Published: https://doi.org/10.1093/nar/gkx681
Preprint: https://doi.org/10.1101/129759
> While only recently developed, the ability to profile expression data in single cells (scRNA-Seq) has alr…
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…