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--Hello,
i have running Control-FREEC on a single chromosome with those parameters:
freec -conf config_WGS.txt
############# config_WGS.txt ###################
[general]
##parameters chrLen…
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The names of these make it unclear which type of entity each is meant to refer to. Based on child terms of the latter, I'm guessing that it refers to the actual molecules and the former refers to the …
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As visualization is not straightforward we strongly feel that it needs prototyping. Thus, we have decided to implement it as plugin for IGV.
We need to make some architectural decisions, so we need y…
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Hi,
Sorry for spamming the issues. I am having an error come up whenever I try to add a whitelist.
essentially the run report gives me no additional explanation other than:
failed: 11 at run…
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Elevated mutation rates at CpG dinucleotides are one of the major contributors to mutation rate variation in mammals. These can't easily be simulated by `sim_mutations`, but there are probably reasona…
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Hello Benjamin,
I've merged sequence tables of several `dada()` runs (in summary around 680 samples) and I am running the `collapseNoMismatch()` right now and it takes quite a while (it's running f…
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This SEP proposes a set of terminology and practices for representing genetic parts and functional devices at various stages of design, synthesis, and assembly. These practices are intended to represe…
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Dear @readmanchiu
I am currently using Straglr 1.5.0 and produced the following output for the FGF14 locus. If I am correct there is a discrepancy in the sequence shown in the vcf and the AL/ALR a…
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Hi Evan
I was wondering if you could explain me the LTR age output.
How is it calculate the age in each LTR family? The summary file have these columns:
Superfamily Family Family_size ElementID D…
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The xml chunk for this variant is:
```xml
current
NM_000162.5(GCK):c.449T>C (p.Phe150Ser) AND Maturity-onset diabetes of the young type 2
current
criteria provi…