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bcgsc
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straglr
Tandem repeat expansion detection or genotyping from long-read alignments
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IndexError: list index out of range
#41
lfearnley
opened
3 weeks ago
1
Symbolic alleles in VCF output
#40
bartcharbon
opened
4 weeks ago
4
VCF output for hetrozygotes seems to be have incorrect GT's
#39
bartcharbon
closed
11 hours ago
5
Loci with multiple motifs at same position
#38
christopher-schroeder
opened
1 month ago
4
Interpretation on <output_prefix>.tsv
#37
HLHsieh
closed
1 month ago
1
refactor: use dataclass for structured tsv reads
#36
lavafroth
opened
3 months ago
4
Calling complex STR patterns
#35
bartcharbon
closed
4 weeks ago
1
Not all loci in output bedfile
#34
ljohansson
opened
3 months ago
2
check if genome sequence for is extractable for rescue before moving on
#33
readmanchiu
closed
3 months ago
0
Could Gender support and VCF output be added?
#32
bartcharbon
closed
1 month ago
5
ValueError: invalid coordinates
#31
jyw-atgithub
closed
3 months ago
8
Genotyping amplicons?
#30
adbeggs
opened
4 months ago
1
Why is detecting and genotyping Short Tandem Repeats (STRs) challenging?
#29
CSU-KangHu
closed
2 months ago
1
Repeat Interruptions
#28
stefandiederich
opened
7 months ago
11
Problem with --trf_args
#27
ilariastewart
opened
8 months ago
1
Problem with straglr_compare
#26
gspirito
closed
8 months ago
6
IndexError: list index out of range
#25
santoshe1
closed
8 months ago
3
can‘t find STR
#24
sunmm0804
closed
8 months ago
2
IndexError: list index out of range
#23
HLHsieh
closed
8 months ago
4
Question about the inconsistent motif between loci.bed and output.bed
#22
HLHsieh
closed
8 months ago
2
Missing output
#21
topochico-one
closed
1 year ago
2
Error: malformed BED entry
#20
ziphra
closed
8 months ago
3
An issue about complex STRs
#19
fjmuzengyiheng
closed
8 months ago
5
Error about "ValueError: start out of range (-265)"
#18
fjmuzengyiheng
closed
1 year ago
3
Straglr not finding TR's that are definitely present in targeted sequencing data
#17
AliSTaylor
closed
8 months ago
9
An issue about reproducibility.
#16
fjmuzengyiheng
closed
8 months ago
8
TRF options
#15
fabienkst
closed
1 year ago
3
About quality of detected VNTRs
#14
Jesson-mark
closed
2 years ago
2
Straglr seems to use multiple threads than specified threads
#13
Jesson-mark
closed
8 months ago
24
Update README.md
#12
zhemingfan
closed
1 year ago
0
TypeError: unsupported operand type(s) for /: 'str' and 'int'
#11
lfearnley
closed
1 year ago
6
STR count per strand
#10
sabiqali
closed
2 years ago
7
Conda release
#9
davidebolo1993
closed
2 years ago
3
Stable release of staglr
#8
zhemingfan
closed
2 years ago
5
What does parameter `min_support` mean in genotyping mode of Straglr?
#7
Jesson-mark
closed
2 years ago
3
Different results from different versions of straglr
#6
Jesson-mark
closed
2 years ago
3
Errors about running straglr to call tandem repeats
#5
LiShuhang-gif
closed
8 months ago
16
Could I set the work directory for straglr?
#4
ttbond
closed
1 year ago
3
Straglr could not find some TR that clearly existed
#3
LiShuhang-gif
closed
2 years ago
10
Understanding output
#2
MeiShu00
closed
2 years ago
4
Error processing plasmid reads
#1
sabiqali
closed
2 years ago
12