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**Task** (what are you trying to do/register?)
I am trying to prepare my data to be used as according to the README.md, but I am stuck in knowing how/where to crop exactly
**What have you tried…
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http://onlinelibrary.wiley.com/doi/10.1002/hbm.23737/full
Supersedes #253, and may make ultimately replace SyN-based susceptibility distortion correction (#496/#544).
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Benchmark the selected experiments described in:
[Balakrishnan, G., Zhao, A., Sabuncu, M.R., Guttag, J. and Dalca, A.V., 2019. Voxelmorph: a learning framework for deformable medical image registrati…
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### Summary
I am running the `Cat12Segment` on a single T1w image. I don't want to run the surface reconstruction workflow so I set `surface_and_thickness_estimation=0`, and `surface_measures=0`.
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_Originally posted by @CGSchwarzMayo in https://github.com/bids-standard/bids-specification/issues/666#issuecomment-1936607978_:
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I came upon \[[#666](https://github.com/bids-standard/bids-s…
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Hi dear developers
I got following error :
File: /home/milad/Desktop/test/result/fmriprep/sub-08/log/20210304-221324_8b77a574-cdeb-4299-befe-57d549bc0e9a/crash-20210304-221402-milad-res_tmpl-2…
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# Macapype: An open multi-software framework for non-human primate anatomical MRI processing
***By David Meunier, Institut de Neurosciences de la Timone (INT), Aix-Marseille Université, CNRS, Marseil…
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Hi, I am using your code to perform a brain extraction on CT images but I sometimes get stuck with an issue in the SkullStrip function, which is private so I cannot investigate. The error message is :…
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I would like to run QSMxT 6.4.4 on some premade QSM images to do the segmentation and analysis.
When I tried to use the command "qsmxt bids/ qsm/ --do_segmentation --do_analysis --auto_yes", the s…
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Dear experts,
First of all, thank you for this tool and making your pre-trained models publicly available. I tried to conduct the WMH segmentation in one subject using a T1w and a FLAIR image of…