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Genome based transcriptome assemblers like Cuflinks produce large no of transfrags. Are these real? if not, they are likely to impair differential expression analysis of isoforms adding more confusion…
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After Adding CONVOLUTION Openseadragonfillter i am getting grid lines on image how to hide this grid lines ??
And it is clearly visible when i zoom image
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Configuration file: db_main.toml
Description: miRDB is an online database for miRNA target prediction and functional annotations.
```toml
[db_mirdb]
source_url = "http://mirdb.org/download/miRDB…
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Here are node categories from the merged monarch graph for nodes coming in from kg-phenio.
I think it might be a bit of a group effort to QC.
| category | prefix | …
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Hello,
I would like to run factR2 on a custom assembly where I ran in the issue described in [https://github.com/f-hamidlab/factR2/issues/7](issue#7). So I thought I try it on the example data you …
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Hello,
I find it really weird to obtain empty files in results folder (A3SS.MATS.JC/JCEC, etc.)
while no Error is poping up, and I am seeing in my slurm.out the following :
````
gtf: 25.908367…
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Before I can start refactoring into a package I need a minimal reproducible example that can be used as a regression test.
@jjriley1 has provided data and tweaked things on the [slam_3UIs jjriley1/…
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You have done a great job with SCASL, but I still have some questions about the result file. Ultimately, I want to analyze the splicing events in different subgroups. So, I started with the probabilit…
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### Describe the bug
Getting "AssertionError: assertion failed attempting to produce joined eager loads" when executing a query. Following up for @rsyring with an MCVE for https://github.com/sqlalc…
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At the Wiki there is "_Support for multiple layers (for performance)"_ on the Roadmap.
I would like to upvote this feature.
It is not only helpfull for performance reasons, but can be very useful f…