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Knowledge-Graph-Hub
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kg-phenio
A Graph for experiments doing ML on ontologies.
BSD 3-Clause "New" or "Revised" License
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Store original relation on original_predicate slot
#152
caufieldjh
closed
4 weeks ago
0
Build fails due to writing `relation` value on `Association`
#151
caufieldjh
closed
4 weeks ago
0
Another fix for predicate assignment
#150
caufieldjh
closed
4 weeks ago
0
Ensure that associations between disease and phenotype get categorized as `DiseaseToPhenotypicFeatureAssociation`
#149
caufieldjh
closed
4 weeks ago
0
Ensure that associations between disease and phenotype get categorized as `DiseaseToPhenotypicFeatureAssociation`
#148
caufieldjh
closed
4 weeks ago
2
Update UPHENO map transform to be compatible with latest Biolink Model
#147
caufieldjh
closed
1 month ago
0
Update koza import (koza.cli_runner -> koza.cli_utils)
#146
caufieldjh
closed
1 month ago
0
Transforms fail due to missing `koza.cli_runner`
#145
caufieldjh
closed
1 month ago
0
Add agent_type and knowledge_level slots to edges
#144
caufieldjh
closed
1 month ago
0
Update fields to align with Biolink Model 4.2.0
#143
caufieldjh
closed
1 month ago
1
Re-add missing node xrefs
#142
caufieldjh
closed
3 months ago
0
Re-add missing node xrefs
#141
caufieldjh
closed
3 months ago
3
Add DDPHENO to edge infores sources
#140
caufieldjh
closed
3 months ago
0
Repair DDPHENO infores_source; restructure source maps
#139
caufieldjh
closed
3 months ago
0
PHENIO node transform can't find infores for DDPHENO
#138
caufieldjh
closed
3 months ago
0
Fix for using Biolink Model in PHENIO transform
#137
caufieldjh
closed
3 months ago
2
Build fails due to `ModuleNotFoundError: No module named 'biolink'`
#136
caufieldjh
closed
3 months ago
0
Split up configs for test and full transform
#135
caufieldjh
closed
4 months ago
0
Build fails because it can't find `phenio-test.json`
#134
caufieldjh
closed
4 months ago
3
Add transformed test artifact
#133
caufieldjh
closed
4 months ago
1
URLs to KGX TSV `tar.gz` files in two builds are 404
#132
justaddcoffee
opened
5 months ago
1
Bump koza to >=0.5.3
#131
caufieldjh
closed
6 months ago
0
ImportError: cannot import name 'ensure_converter' from 'sssom.context'
#130
caufieldjh
closed
6 months ago
2
Further dependency fixes to avoid incompatibilities
#129
caufieldjh
closed
6 months ago
2
Build fails during transform due to `ModuleNotFoundError: No module named 'biolink'`
#128
caufieldjh
closed
6 months ago
3
Dependency fixes for biolink-model and universalizer
#127
caufieldjh
closed
6 months ago
0
Transform stage of build fails due to `ImportError` in `sssom`
#126
caufieldjh
closed
6 months ago
3
Repair validation error during transform stage
#125
caufieldjh
closed
7 months ago
0
Build fails due to pydantic `ValidationError`
#124
caufieldjh
closed
7 months ago
1
Update `biolink-model` dependency to next release (3.5.5)
#123
caufieldjh
closed
6 months ago
0
Add `deprecated` column
#122
kevinschaper
closed
7 months ago
2
Add config file to specify transform parameters and pass deprecated flag
#121
caufieldjh
closed
7 months ago
2
Use config file to specify transform parameters for kgx
#120
caufieldjh
closed
7 months ago
0
Update infores dicts in phenio source transforms
#119
caufieldjh
closed
9 months ago
0
MOD missing from infores sources
#118
caufieldjh
closed
9 months ago
0
Dependency updates
#117
caufieldjh
closed
10 months ago
0
Bump kgx to >=2.0.0
#116
caufieldjh
closed
10 months ago
0
Switch to explicit looping in koza
#115
kevinschaper
closed
10 months ago
1
Rewrite Koza ingest of PHENIO to use updated looping behavior
#114
caufieldjh
closed
10 months ago
0
Synchronize with semsql build (i.e., do it here)
#113
caufieldjh
opened
11 months ago
0
Get synonyms
#112
caufieldjh
closed
11 months ago
6
Get synonyms in the output
#111
caufieldjh
closed
11 months ago
0
Transforms raise many Koza csv_reader warnings
#110
caufieldjh
closed
11 months ago
1
Add OMIT and SNOMED to edge infores
#109
caufieldjh
closed
12 months ago
0
Add SNOMED to infores map
#108
caufieldjh
closed
12 months ago
0
Add OMIT to infores_sources
#107
caufieldjh
closed
12 months ago
0
Unexpected OMIT prefix breaks infores maps
#106
caufieldjh
closed
12 months ago
1
Adjust build schedule to capture updates
#105
caufieldjh
closed
12 months ago
1
Pass synonym and xref from obojson to node tsv
#104
kevinschaper
closed
1 year ago
3
Invalid predicates
#103
kevinschaper
opened
1 year ago
2
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