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HI, I have been trying to create "physeq" and encountered the following error while loading the TAX table.
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for f…
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magnet.py takes taxonomy identifier and abundances percentage as input. I was wondering if i can make a tsv with these columns from output of other tool and run this ? Are there are caveats or whether…
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Hey,
Thank you for the cool script. I followed from here:
https://bioinformatics.stackexchange.com/questions/4976/how-to-automate-ncbi-genome-download
Now I have a list of taxid, say in a .txt…
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It would be nice to have a way of mapping scientific names to taxids.
Like the service provided at http://www.ncbi.nlm.nih.gov/Taxonomy/TaxIdentifier/tax_identifier.cgi
but programmatically and locall…
iimog updated
5 years ago
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### Is your feature request related to a problem? Please describe.
I want to re-use the long list of [VAT types](https://github.com/stripe/stripe-python/blob/master/stripe/_tax_id.py#L249) for my int…
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### Prerequisites
- [x] make sure you're are using the latest version by `taxonkit version`
- [x] read the [usage](http://bioinf.shenwei.me/taxonkit/usage/)
### Describe your issue
In the do…
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The docs say:
For person statements, the scheme should have the pattern {JURISDICTION}-{TYPE} where JURISDICTION is an ISO 3-digit country code and TYPE is one of PASSPORT, TAXID or IDCARD.
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I'm trying to use a clustered version of the NR database for taxonomy assignment but am running into some issues. Any assistance would be appreciated.
## Expected Behavior
When running `mmseqs cre…
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When I run make_kreport.py, it generates the following error (KeyError: 'unclassified (taxid 0)'). Does anyone know what causes it?
PROGRAM START TIME: 09-05-2020 13:40:52
>> STEP 1/4: Reading tax…