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Hello,
I've run CNVkit on a set of matched tumour/normal exomes and I want to get BAFs. I'd like to confirm the best approach for building an appropriate vcf file using HaplotypeCaller, since I've …
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- [x] Definition of the scope of the new MIABIS components.
- [ ] Identification of a few relevant use-cases for each Dataset Type to base the development work on.
- [x] Approval of the task proposal…
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Since I've been going through these in such detail I've noticed a few cases where the output doesn't look like what I would expect but I want to clear them with you @jakelever before I make the approp…
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## Bug Report
### Affected tool(s) or class(es)
Mutect2 in tumour-normal mode
### Affected version(s)
- 4.2.6.1
- 4.2.0.0
### Description
Mutect2 crashes with an error:
```
16:53:19.98…
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## Project Request
Creating multiple machine learning models to classify brain tumors given images of brain scans.
---
| Field | Description |
| ------ | -------------…
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## The Problem
As part of the clinical exceptions requests, we want to add two text values to Specimen schema's `percent_tumour_cells`.
The new values are:
- `Unknown`
- `Not applicable`
See compl…
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**Is your request related to a specific disease? Please describe.**
Similar request to https://github.com/DiseaseOntology/HumanDiseaseOntology/issues/1242
The following diseases are missing the …
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We have tried running QA(non-large), document classification and the 3 RE models. All of them seem to have learned1, learned2,.... learned9 in the output.
What do they stand for or is there any step …
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Hi All,
I have a set of midpoints (from labelled tumours within a set of scans [512x512x512 voxels]). I'm just trying to create a sphere with a radius of 10 voxels at each midpoint. To do this, I'…
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Hi,
I'm using lumpyexpress to process with my tumor-normal BAM files. I'v made and sorted splitter and discordant files before I run this:
lumpyexpress -B /56T/Freya/P#129/testBAM/DZKP-Tumour-AN2971…