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Hey!
First of all, really appreciate virsorter (the first and also this followup tool).
With the novel classification, I came across the fact that (circular) mitochondrial sequences are consiste…
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Dear Professor Chen,
First of all, I would like to thank you and your team for developing ERVcaller, which has great assisted my project.
Recently, I am trying to assemble the inserted virus seq…
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Add `dustmasker` as a tool to viral-ngs for pre-processing of metagenomics databases (removal of low-complexity sequences). It's part of the blast toolset so the `Tool` subclass should perhaps be adde…
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Construct databases using the same refseq data as the `kraken2` database which includes
- complete genome, chromosome, scaffold and contigs
- Archaea, Bacteria, viral, protozoa, fungi, plasmid…
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Can you please provide a script that takes two FASTA files as input and returns a single number: the intergenomic distance? We want to run this script on a global scale, comparing all ICTV exemplars n…
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From: https://github.com/geneontology/go-ontology/issues/21605
From @genegodbold
The annotations for certain GO terms have both parasite and host sequences attached to them, when it seems as if t…
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Hi! I had this issue:
```
time VirID assembly_and_basic_annotation -i SRR1007830
5_1.fastq -i2 SRR10078305_2.fastq -out_dir virid_output --threads 24
[2024-10-01 11:41:45] INFO: VirID v3.1.0
[…
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Thanks for the implementation of this program.
I receive an error when creating the viral and non-viral databases.
The viral database was created correctly, however i receive an error message whe…
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hi dear jiarong et al,
there is a question about 'min-score'.
Can I use the score in output file 'final_viral_socre.tsv' to filter the min-score I want ? because I got all of score >0.5 's results w…
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Thank you so much for Prof. Roux to provide this script for the clustering of the novel viral sequences!
I have two questions that I sincerely want to be answered:
1. I want to make sure whether thi…