jiarong VirSorter2 issues

jiarong / VirSorter2

customizable pipeline to identify viral sequences from (meta)genomic data

GNU General Public License v2.0

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issues

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can VirSorter2 run without an internet connection after installation?

#224 JIAJ-lab opened 2 weeks ago
1
libmamba Non-conda folder exists at prefix

#223 sunyuepeng00 opened 2 weeks ago
1
libmamba Non-conda folder exists at prefix

#222 joelive opened 1 month ago
11
Correct the URL to install Mamba

#221 anniedussault opened 1 month ago
0
fix typo in readme file

#220 anniedussault opened 1 month ago
0
Question about criteria for prophages extraction

#219 KateSakharova closed 2 weeks ago
1
How to parallel execution on Slurm cluster?

#218 KateSakharova closed 1 month ago
3
Questions about prepare4dramv

#217 chenyj8 closed 2 months ago
2
CRITICAL:No config.yaml dectected from previous run

#216 stevens-1 opened 2 months ago
7
viral classification failure

#215 rocherbpb opened 2 months ago
3
CreateCondaEnvironmentException: Could not create conda environment

#214 JCHmu closed 2 months ago
0
The 'final-viral-combined-for-dramv.fa' file contains longer sequences than that with the same ID in the "final-viral-combined.fa" file

#213 473021677 opened 2 months ago
1
Error message in "circular-linear-split"

#212 adijatj opened 4 months ago
4
An error

#211 baidefeng opened 4 months ago
1
The 'final-viral-combined-for-dramv.fa' file contains sequences with the same ID

#210 llechoecho closed 4 months ago
2
GUROBI error:

#209 WhatChan123 closed 4 months ago
3
run error

#208 Xugh1 closed 4 months ago
3
Compatibility issue of scikit-learn 0.22.1 with python 3.9 in virsorter run

#207 ChristosMatzoros closed 4 months ago
1
run error

#206 Xugh1 closed 5 months ago
3
Questions for use in a Galaxy tool wrapper

#205 bernt-matthias opened 5 months ago
4
error of step3

#204 2061574124 opened 5 months ago
7
Validation of Database Fetching

#203 ChristosMatzoros closed 5 months ago
1
run issues

#202 Xugh1 closed 5 months ago
2
Virsorter2 Compatibility on MacOS: Usage and Limitations

#201 ChristosMatzoros closed 5 months ago
2
mamba activate vs2 fail,why?

#200 iamamking closed 6 months ago
3
Run stop

#199 ntromas closed 4 months ago
10
The output files don't update

#198 Betula0422 opened 6 months ago
4
error in running test

#197 tianyi1616 opened 7 months ago
1
Error when running VirSorter2 without circular seqs

#196 danim0 opened 7 months ago
2
Need help in understanding the output file

#195 sahilrishav2 closed 6 months ago
8
run a test: Error in rule circular_linear_split:

#194 tianyi1616 closed 7 months ago
1
Virsorter2 renames Contig fasta headers

#193 ghost closed 7 months ago
1
JSONDecodeError

#192 shaconn opened 8 months ago
1
Database update

#191 blaizereal opened 9 months ago
1
Error in rule classify_by_group:

#190 xjhzjucas closed 9 months ago
11
Conda install dependencies issue

#189 vir-user closed 10 months ago
1
I only need the information of seqname and group columns in the final-viral-boundary.tsv file,Is there any way to speed things up?

#188 qkqk-hub opened 11 months ago
1
virsorter2 error

#187 Microbion closed 11 months ago
2
how does VirSorter2 distinguish circular sequences?

#186 marade closed 11 months ago
2
singluarity

#185 wuhuiyun07 closed 11 months ago
1
Error:Duplicate seqname detected in .../....fna,Please make sure all sequence names are unique..

#184 eiko33 closed 11 months ago
2
about conda

#183 ZT-ls closed 1 year ago
1
CP12 in affi contigs file

#182 Drob84761 opened 1 year ago
1
Error:non-zero exit code

#181 jojyjohn28 closed 9 months ago
7
Update/readme reqs

#180 ccoulombe opened 1 year ago
0
Fixed install requirements

#179 ccoulombe opened 1 year ago
0
Error in rule gene_call

#178 fhdbqr opened 1 year ago
1
Error in rule merge_split_hmmtbl_by_group_tmp:

#177 ileleiwi opened 1 year ago
4
[BUG] in writeMPS with open(filename, "w") as f: FileNotFoundError: [Errno 2] No such file or directory: 'tmp/d43ef73e150d46648f4e326813c760da-pulp.mps'

#176 erfanshekarriz opened 1 year ago
2
long-reads

#175 katievigil closed 1 year ago
4