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Good morning
I have been trouble shooting this for a day to no avail, and as such am posting this question/query about my error message.
Command
```
ragtag.py merge ../../hifi_assemblay/all…
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Hi, I am trying to visualize file (~450mb) generated with juicer 1.6. It works seamlessly in web version but in desktop version (Juicebox 1.9.0, mac M1) it keeps evoking 'error loading .hic file'. Tes…
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Hi,
What are the differece between v1.2 (git clone from github source and compiled) and v1.2a.1( install using conda)?
I got differece results using these two version, it seem that v1.2 (git clo…
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Hello
Can we use BAM or BED files for the visualisation of the Hic contacts maps? Any command example?
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Hi Zhou:
After running yahs, I have gotten worse assembly metrics than with the hifiasm-only assembly. The number of genome scaffolds has increased from 1,200 to 9,500, the scaffold N50s have decreas…
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Hi,
How you ever seen a hic heatmap like this one? Are there serious problem in contig or hic data?
Waiting for your suggestions, thank you very much.
Best,
Kun
![all](https://user-images…
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Hi:
I am studying a non-model diploid mammal species with a large genome size (~6GB). I have 30X Hifi data, as well as Hi-C data from Dovetail Genomics using their Chicago libraries. I have made an a…
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HELLO.
my out.JBAT.log file generated is empty.
(java -jar -Xmx32G juicer_tools.1.9.9_jcuda.0.8.jar pre out_JBAT.txt out_JBAT.hic.part
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Hi, this is a great tool! I have managed to manually curate my map, however, I was was using the pretext_to_tpf.py script to convert my APG file into a fasta file and got this error.
Traceback (mo…
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I have tired running a few data sets through were we have XY linkage groups represented well in the contigs but they fail to scaffold with YAHS - The autosomes look nice but the sex chromosomes do not…