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I can't load the plugin.The default Jbrowse does'nt have
"storeClass" : "JBrowse/Store/SeqFeature/BEDTabix"
Where can I get this? Thx
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I found another prerequisite not listed in the documentation. I think this is an Apollo issue as you guys do reference bower, but if it belongs in JBrowse, just let me know and I'll post it over ther…
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I was just checking out 2.0.3 and got this error below. Should npm be added to the list of required software?
``` shell
$ ./apollo clean
Defining custom 'build' task when using the standard Gradle l…
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I support optional plugins with #935 . . I need to work on getting it to do the same with "release". Right now the target does the same as it did before. However, apollo deploy and run-local integr…
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I've found that if the name index (generated by `generate-names.pl`) is absent, this plugin could not be used. (I use indexed fasta as reference sequence). Currently no manual documents mentioned this…
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Instead of adjust to label string
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Suppose a gene with exon-intron structures like this:
![a](https://cloud.githubusercontent.com/assets/1146090/9538416/bc34e092-4d76-11e5-8c0c-d9279f7e3872.JPG)
If you click on this gene, you can view…
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BioJS was initially a [registry of browser components for biological visualization](http://www.ebi.ac.uk/Tools/biojs/registry/). Bionode is more oriented for data manipulation (finding, parsing, analy…
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After I pulled and deployed yesterday (4/17) and today (4/18), tracks won't load, i.e. RequestError: Unable to load http://gmod-dev.nal.usda.gov:8080/apollo/jbrowse/data/tracks.conf status: 500. The…
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I'm adding @enuggetry to this issue because I don't know if this was a JBrowse bug that snuck in or we did this. :bowtie:
We need to remove one "Add sequence search track" option from new "Track" to…