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Hi folks,
Thanks for making this easy to follow tool. I have a collection of genomes from the same family and I would like to make a pangenome out of them. However, these genomes are quit different…
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Hi there, thanks for making this great software available. My error looks similar but distinct from issue #139 , so I figured I'd post it. I've been running pggb v0.1.3 (cloned from github) on a colle…
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Hello,
I've generated a graph genome of five small assemblies (~220-250Mb genome size) using the cactus pangenome workflow.
The workflow completes successfully, and generated a gg, gbwt and xg genom…
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The version string for the 0.6.2 release version available on Bioconda is missing from the `odgi help` and `odgi version` commands.
```
$ docker run -it quay.io/biocontainers/odgi:0.6.2--py39h98c8…
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Hello
I am using cactus to construct the pangenome graph of two genomes. I intended to refer to the [https://github.com/ComparativeGenomicsToolkit/cactus/blob/mg-base/doc/pangenome.md#evolver-prim…
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Hi,
Thank you very much for such a nice tool.
I would like to represent not only snps but also structural variants in the input VCF.
Could you please tell me how to do that?
This is my toy…
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Hi there @anialisiecka :)
I am applying ALIBI to a DRB1-3123 pangenome graph which was build with PGGB. I am taking the `seqwish` output of PGGB, as it presents the raw, unlinearized graph. It look…
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https://mp.weixin.qq.com/s/t4FmPmSl6N7iqNA9hn8VGQ
ixxmu updated
2 years ago
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Hi
I wanna run pggb based on two genomes according to the PanSN-spec. How can I understand the haplotype_id name? My scaffold name is like this :
genome 1 : X#1#scaffold1 X#2#scaffold2 ..... X#5…
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**1. What were you trying to do?**
Surject gam of pool-seq reads to bam
**2. What did you want to happen?**
Produce a valid bam file for viewing/analysis
**3. What actually happened?**
It…