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When exporting a 2D plot (contourf plot for example) in vector form (PDF) or as a bitmap(PNG), demcmap is completely ignored and export reverts to "parula". This does not happen with other inbuilt col…
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Hello, I currently have scATAC data with approximately 3.43 million cells and around 160,000 peaks. When I attempt LSI dimensionality reduction using all peaks, it takes an incredibly long time (seemi…
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This will be a fun one. I bet this will take longer than a week :c
### Packets
- [x] https://wiki.vg/Protocol#Game_Event (only event 13, for waiting for chunks)
- [x] https://wiki.vg/Protocol#Chunk_D…
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if a valid peaks interval set is passed (i.e. has `'chrom','start','end'`), but lacking `peak_name` column - call `peak_names()` internally to solve this issue, instead of aborting:
```{r}
peak_set …
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Hi,
I have a very simple production service which basically do HTTP redirects and serves ~1000 rps.
Currently deployed on GCP Cloud Run and usually working on 1 instance on 1 CPU.
On net/http i…
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**Describe the bug**
I was working with 13C labeled LC-MS data in El-MAVEN (v0.10.0). To discover all isotopic peaks when the parent peak abundance is 0, we imported one unlabeled sample together wit…
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I have a few problems in the function of get_2D_peaks in fingerprint.py.
background = (arr2D == 0)
eroded_background = binary_erosion(background, structure=neighborhood,
…
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I am trying to average together multiple scans into a single summed spectrum, and I'm having issues with the add function. Perhaps I'm using it wrong, but here is an example.
**To Reproduce**
im…
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Hi there,
questions about the y-scale when
mode: 6,
alphaBars: false,
ansiBands: true,
barSpace: .5,
channelLayout: 'single',
…
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Hello,
thanks for putting this tool together.
Could you please elaborate on what exactly the output files are and how one would need to filter them?
In contrast to the README I get two files, `…