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Need a help page for the LIS gene family search page: brief but suitable for both naive and general users.
[LEGUME-309] created by sdash-legume
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To follow up on what you and Iliana have started with the tree2domain mview and
addition of Domain filter on the tree page, why don't you go ahead and add a new
column to the domain mview and view tha…
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The "web service" to look up a phylotree by member gene name allows affiliated sites (e.g. Soybase) to construct links to LIS starting with a gene.
But currently, the gene that was used to get to the …
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peanutbase-dev and -stage are using tripal 7.x-2.0.1-alpha
while lis-dev and -stage are on 7.x-2.0-rc1
there are some minor tripal api differences between them that create code differences for the tr…
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The legend should show the full species name, 5 letter abbreviation used in the labels in the view, and also show the html color used in the graph for each species.
[LEGUME-413] created by agr
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Gene family search page (http://lis-stage.agron.iastate.edu/search/phylotree) link for Lotus is malformed and hence unproductive.
Change to japonicus from japnoicus.
http://lis-stage.agron.iastate.edu…
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It would be nice to be able to jump to a gene model in GBrowse from its gene record page.
[LEGUME-247] created by ecannon
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we produced iprscan analysis for the gene family "consensus" sequences (ie hmmemitted representative sequences) in order to support the AHRD descriptors given to the families. By loading these, we'll …
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Leaf nodes with large copy numbers get huge bubbles. I have attempted a fix in this commit: kemaleren/phylotree.js@947d5cf192bfa36dce40f84d8d97f216b30eee4c. Not submitting a pull request yet, because …
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for now, this could be done as part of the phylotree display, although in principle it would be good to make it independent (since we have alignments for which no trees will exist). Let's start with g…