legumeinfo jira-issues issues

legumeinfo / jira-issues

placeholder repo for issues migrating from JIRA system, to be moved to their appropriate places later

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issues

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peanutbase blast seems not to be accepting valid fasta input in the text box (including example sequence)

#708 adf-ncgr closed 6 years ago
1
blast against gene families doesn't link properly to phylotree

#707 adf-ncgr closed 4 years ago
1
When linking from gene atlas, no gene model in embedded JBrowse

#706 adf-ncgr closed 4 years ago
1
Redesign linkout module to be more generic and expandable

#705 adf-ncgr opened 6 years ago
3
Sync LegumeFederation BLAST UI repository with Tripal repository

#704 adf-ncgr opened 6 years ago
0
Germplasm link to GIS tool should not default to showing traits for germplasm

#703 adf-ncgr closed 6 years ago
4
Rework 'External' page ... maybe remove it

#702 adf-ncgr opened 6 years ago
0
Protein links in protein domain search results should link to their respective databases, not a generic Tripal feature record page

#701 adf-ncgr opened 6 years ago
0
Sequence links on gene atlas tables should go to gene model page

#700 adf-ncgr closed 6 years ago
1
Peanut G/JBrowse links for peanut gene models should link to PeanutBase

#699 adf-ncgr closed 6 years ago
0
Turn off link to GIS on stock page if no lat/long coordinates

#698 adf-ncgr closed 4 years ago
1
Link QTL search form to CSFL QTL search

#697 adf-ncgr closed 4 years ago
1
something's not right with links from at least one of the MAS pages

#696 adf-ncgr closed 6 years ago
1
Need gensp prefix to link to GCV. Make sure this is used consistently across LIS and PB

#695 adf-ncgr closed 6 years ago
1
Remove links between gene builds and chromosomes/scaffolds

#694 adf-ncgr opened 6 years ago
6
Fix gene model build field in gene model page

#693 adf-ncgr closed 6 years ago
8
Re-implement web services in Tripal BLAST using Tripal 3.0 web service frame work

#692 adf-ncgr opened 6 years ago
1
BLAST jobs still time-out

#691 adf-ncgr opened 6 years ago
1
Changes Traits&Maps page so it is defined by a spread sheet

#690 adf-ncgr opened 6 years ago
0
Write a SOP for adding new genetic maps to LIS and the appropriate 'Mine(s)

#689 adf-ncgr opened 6 years ago
0
Options in gene model search drop down should be species names, not gensp abbreviations

#688 adf-ncgr opened 6 years ago
1
Typo Fix on Legume_Organisms admin menu

#687 adf-ncgr closed 6 years ago
1
Add GenBank annotation tracks to browsers

#686 adf-ncgr opened 6 years ago
0
Add links to GenBank to assembly page

#685 adf-ncgr opened 6 years ago
2
Link ontology terms to their PURLs

#684 adf-ncgr closed 6 years ago
2
Consider replacing gene basket with download options

#683 adf-ncgr opened 6 years ago
3
Remove list of search tools from the peanut sequencing project page

#682 adf-ncgr opened 6 years ago
0
Remove all links to beangenes

#681 adf-ncgr closed 6 years ago
0
Pull phylotree link from db table, remove from Drupal view

#680 adf-ncgr closed 6 years ago
5
Remove Legume_Organisms & Sequence to Tree from admin menu

#679 adf-ncgr closed 6 years ago
2
Add NCBI gene model track

#678 adf-ncgr opened 6 years ago
1
Expression Data: Redo it via 'ongenome' schema and new Drupal module(lis_expression).

#677 adf-ncgr opened 7 years ago
0
Tripal upgrade to 2.1 trial at LIS

#676 adf-ncgr opened 7 years ago
8
correct misspelling of "concensus" in example search text for featuremap search

#675 adf-ncgr closed 6 years ago
2
LIS 'Keyword Search' unresponsive for Arachis

#674 adf-ncgr closed 7 years ago
2
Tour button on two lines

#673 adf-ncgr closed 7 years ago
1
red clover macrosynteny blocks have some loading issues

#672 adf-ncgr closed 7 years ago
1
LIS Species page: Link to species mine if exists

#671 adf-ncgr closed 6 years ago
1
Customize tripal_analysis

#670 adf-ncgr opened 7 years ago
3
Modify module script for lis_species_features to show data store

#669 adf-ncgr closed 7 years ago
8
Add a 'gene' link for Lupinus angustifolius and Glycine max on species page

#668 adf-ncgr closed 7 years ago
2
Ontology Search bugs

#667 adf-ncgr closed 6 years ago
1
Link to assembly analysis record is broken on marker record page

#666 adf-ncgr closed 7 years ago
1
Reloading MARKER worksheet appears to remove physical positions

#665 adf-ncgr closed 7 years ago
3
a new use case for on-demand tree building

#664 adf-ncgr opened 7 years ago
0
GCV: Include white genes in legend

#663 adf-ncgr opened 7 years ago
0
GCV: Macro-Synteny Colors

#662 adf-ncgr closed 7 years ago
0
cmap links need to be updated to use https, else iframes are EMPTY

#661 adf-ncgr closed 7 years ago
1
GCV: Contextmenu

#660 adf-ncgr opened 7 years ago
0
GCV: Hovering

#659 adf-ncgr closed 7 years ago
1