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Hi Volker,
I just wondered why the RNA velocity flows have changed in my case (not entirely, but significantly) after I have updated scvelo to version 0.1.15 without having done any further changes. …
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Hi,
I'm getting the following error when trying to initially import scvelo through `import scvelo as scv` (currently running scvelo 0.1.16, scanpy 1.4, numpy 1.15.4).
Any help would be greatly appr…
PattF updated
5 years ago
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Hi,
I realized that the transition probability matrix estimated using RNA velocity and some graph analysis on this transition matrix might be a good way to quantify cell state transition. The scvelo…
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thanks for this nice package! It works pretty well in my hands. I am pretty curious about the method you used to estimate velocity, in comparison to the original RNA velocity paper. Is there any plans…
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Using _dyntoy_ 0.9.9 in _R_ version 3.6.0 on Ubuntu.
When running
```
library(dyntoy)
dataset
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I try to run on 3 tests bam files (smart-seq2) sorted by coordinates
My problem is that one of the files is not considered in the analysis and I dont know why.
I used this command:
/usr/local/bin/…
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Hi, I decided to give Splatter a go to use as the basis for a quantitative comparison for a computational method I'm developing (shameless plug: www.github.com/krishnaswamylab/MELD).
I want to simu…
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Is there a way to adjust for possible cell cycle effects in velocyto?
I am trying to make sense of a velocyto output for (what we think are) a set of cells in different stages of differentiation, f…
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Hi.. i installed velocyto on HPC cluster and it was fine.. but now when i do
$ velocyto --help
Traceback (most recent call last):
File "/....../anaconda3/envs/my_pymc_env/bin/velocyto", line 7…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/BUStools/TENxBUSData
Confirm the following by edi…