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As I understand, reference name of the current release of `lineages` is "outgroup_A". But this line expects "Wuhan..." :
https://github.com/hCoV-2019/pangolin/blob/ca5e359d066b1f114785db274c76ea061…
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I love the tool, and would like to ask just one question.
Do you have plans to update the lineage assignments you show in https://github.com/hCoV-2019/lineages/tree/master/lineages/data
Regular…
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Was wondering what the main reason for the following fail situation might be?
It's only 8 SNPs and 0 indels from WUHAN-1 so was a bit surprised.
```
taxon,lineage,SH-alrt,UFbootstrap,lineages_v…
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pangolin-1.1 master HEAD
```
File "/opt/bin/pangolin", line 5, in
from pangolin.command import main
File "//opt/python/lib/python3.7/site-packages/pangolin/command.py", line 10, in
…
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I have been running my own real-time analysis of COVID-19 sequences from GISAID, and I saw that the recent Wisconsin sequences on GISAID had collection YYYY-MM, but no DD, so I reached out to the subm…
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This issue occurs in narratives, where approaching a page from one direction causes the map bounds to be different from approaching the same page from the other direction. This is best explained in a …
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I was thinking to add these on the left side of the current UI:
- [ ] add vertical list of querie in the front page (see image)
- [ ] add horizontal list of queries under the search bar (see image) …
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For example, `hCoV-19/Iran/MHKN-1/2020|EPI_ISL_413517|2020-02-26` is only 322 nt long in the FASTA files. This is screwing up the TN93 calculations.
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Sorry to bother you, I want to know that how can I get the date information about the branch(i. e.
the original gene generate the first branch) in the website (https://nextstrain.org/ncov) . We di…
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So now, does the number in the bootstrap column mean "the number of boostrap trees, out of 100 tested, that support this lineage assignement"?
_Originally posted by @rainwala in https://github.com/…