cov-lineages pangolin issues

cov-lineages / pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

GNU General Public License v3.0

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issues

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Add entries for pangolin-data/-assignment 1.28.1

#545 AngieHinrichs closed 6 days ago
0
Add entries for pangolin-data/-assignment 1.28

#544 AngieHinrichs closed 2 weeks ago
0
Add entries for pangolin-data/-assignment v1.27

#543 AngieHinrichs closed 2 months ago
0
Update data_compatibility.csv

#542 wm75 closed 2 months ago
3
Pangolin installation with conda v24.1.2 is failing

#541 satya-lalam opened 3 months ago
1
update https://pangolin.cog-uk.io/ ?

#540 kapsakcj opened 4 months ago
2
Add entries for pangolin-data/-assignment 1.25.1

#539 AngieHinrichs closed 4 months ago
0
Add entries for pangolin-data/-assignment 1.25

#538 AngieHinrichs closed 4 months ago
0
Error in rule scorpio: with pangolin 4.3

#537 gadepallivs opened 4 months ago
7
Add entries for pangolin-data/-assignment 1.24

#536 AngieHinrichs closed 5 months ago
0
new updated pangolin doesn't work

#535 yl315504 opened 7 months ago
4
Pango Designation Hash

#534 whottel closed 7 months ago
2
How to stop writing to read-only home directory

#533 erinyoung closed 7 months ago
5
Add entries for pangolin-data/-assignment 1.23

#532 AngieHinrichs closed 8 months ago
0
Example output columns shifted

#531 pontushojer closed 9 months ago
7
faToVcf seems to omit insertions in vcf output (input to usher)

#530 smsaladi closed 9 months ago
3
beginning and end of reference masked?

#529 smsaladi closed 9 months ago
2
Latest version not available in conda

#528 KartofellSalat closed 11 months ago
1
Remove unmaintained version in Dockerfile

#527 corneliusroemer opened 11 months ago
0
Unpin pip (and snakemake)

#526 corneliusroemer closed 11 months ago
2
Python version conflict with Snakemake

#525 dskola closed 11 months ago
3
Update environment.yml to handle snakemake dependencies

#524 dskola closed 11 months ago
1
Add constellations 0.1.12 to data_compatibility file

#523 wm75 closed 1 year ago
1
Add entries for pangolin-data/-assignment 1.21

#522 AngieHinrichs closed 1 year ago
0
Remove max_count/max_lineage 'voting' logic from usher_parsing

#521 AngieHinrichs closed 1 year ago
0
Pangolin Web Application will not load.

#520 s-groc closed 11 months ago
5
Depreciate pangolearn

#519 rmcolq closed 1 year ago
0
Pangolin.cog stuck in analyzing

#518 pu1621 closed 11 months ago
6
Pangolin.cog-uk.io - Not loading

#517 coreymeloche closed 11 months ago
1
pangolin vs nextclade

#516 fancybeakers closed 6 months ago
4
Commit version 86eb4975fc4fc8b5d92148c2e370045ae9bf9f5d

#515 EduardoQD closed 1 year ago
5
Unpinned version

#514 aineniamh closed 1 year ago
1
DOC: More reliable installation instructions

#513 corneliusroemer opened 1 year ago
0
Add entries for pangolin-data/-assignment 1.18.1.1

#512 AngieHinrichs closed 1 year ago
0
Add entries for pangolin-data/-assignment 1.18.1

#511 AngieHinrichs closed 1 year ago
0
AttributeError: 'NoneType' object has no attribute 'startswith' for ambiguous sequence

#510 phyden closed 1 year ago
13
The best way to update pangolin

#509 afdhalrashid opened 1 year ago
1
Pangolin conflict

#508 carlottaolivero opened 1 year ago
1
Naming convention violates best practices in regard to not using geographical Names

#507 AurelWu closed 1 year ago
1
Workaround for setup-miniconda failing to install mamba on ubuntu

#506 AngieHinrichs closed 2 months ago
2
Add entries for pangolin-data/-assignment 1.18

#505 AngieHinrichs closed 1 year ago
0
Python Error after Updating Pangolin

#504 steinbrl closed 1 year ago
5
Add parameter to main in command.py

#503 afdhalrashid closed 1 year ago
4
Rebuild pangolin when edit some of the files

#502 afdhalrashid closed 1 year ago
2
Add latest pangolin-data/-assignment releases to compatibility file

#501 wm75 closed 1 year ago
1
Pangolin v4.2 stuck on "Using UShER as inference engine."

#500 VinceLiAB closed 1 year ago
12
Use usher-sampled if installed

#499 AngieHinrichs closed 1 year ago
5
cov-lineages.org doesn't find B.1.617.3

#498 trilisser closed 10 months ago
1
Snakemake issue with asyncio / python3.11

#497 abel-betraoui opened 1 year ago
4
Add entries for pangolin-data/-assignment 1.16

#496 AngieHinrichs closed 1 year ago
0