issues
search
cov-lineages
/
pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
GNU General Public License v3.0
427
stars
107
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add latest pangolin-data/-assignment releases to compatibility file
#501
wm75
closed
1 year ago
1
Pangolin v4.2 stuck on "Using UShER as inference engine."
#500
VinceLiAB
closed
1 year ago
12
Use usher-sampled if installed
#499
AngieHinrichs
closed
1 year ago
5
cov-lineages.org doesn't find B.1.617.3
#498
trilisser
closed
1 year ago
1
Snakemake issue with asyncio / python3.11
#497
abel-betraoui
opened
1 year ago
4
Add entries for pangolin-data/-assignment 1.16
#496
AngieHinrichs
closed
1 year ago
0
Revert "Add entries for pangolin-data/-assignment 1.16"
#495
AngieHinrichs
closed
1 year ago
0
Add entries for pangolin-data/-assignment 1.16
#494
AngieHinrichs
closed
1 year ago
0
New mutation from wastewater sample
#493
pratibha-kadam
opened
1 year ago
2
Pangoline Lineage calling despite "N" at defining SNP position
#492
MantaRay87
opened
1 year ago
3
Tabulate fix
#491
aineniamh
closed
1 year ago
1
Add entries for pangolin-data/-assignment 1.15.1 (#488)
#490
AngieHinrichs
closed
1 year ago
0
update in tabulate leads to error when running pangolin
#489
abel-betraoui
closed
1 year ago
10
Add entries for pangolin-data/-assignment 1.15.1
#488
AngieHinrichs
closed
1 year ago
0
pangolin not assigning new recombinant lineage
#487
enabieva
closed
2 years ago
2
Add entries for pangolin-data/-assignment 1.14 (#483)
#486
AngieHinrichs
closed
2 years ago
0
Please merge data_compat_v1.14 branch into master
#485
wm75
closed
2 years ago
1
"Check your environment, didn't find appropriate files from the pangoLEARN repo. Trained model must be installed, please see https://cov-lineages.org/pangolin.html for installation instructions."
#484
nonononanana
closed
1 year ago
6
Add entries for pangolin-data/-assignment 1.14
#483
AngieHinrichs
closed
2 years ago
0
BA.4* sequences identified as BA.2 by Pangolin after Scorpio override
#482
gyebra-phs
closed
2 years ago
4
Sequence unable to be processed with Pangolin (unknown error)
#481
coreymeloche
closed
2 years ago
2
Add entries for pangolin-data/-assignment 1.13 (#479)
#480
AngieHinrichs
closed
2 years ago
0
Add entries for pangolin-data/-assignment 1.13
#479
AngieHinrichs
closed
2 years ago
0
Inconsistency between data_compatibility.csv and releases in Github
#478
pvanheus
closed
1 year ago
6
Regarding Scorpio Call Prioritisation
#477
msinno01
closed
2 years ago
3
Add entry for pangolin-data / -assignment 1.12
#476
pvanheus
closed
2 years ago
1
#467 potential fatovcf version print out
#475
aineniamh
closed
2 years ago
0
Provide data packages compatibility list
#474
wm75
closed
2 years ago
1
BA.2.75 sequence gets misclassified as BA.2.73
#473
KHajji
closed
2 years ago
9
Web application doesn't work
#472
carlottaolivero
closed
2 years ago
4
regarding installation of pangolin
#471
Rashmi-12-a11y
closed
2 years ago
7
Usher calls an unexpected high proportion of BE.1 Variants
#470
GorgonVZ
closed
2 years ago
2
Can't install pangolin 4.1.1
#469
synmuh
closed
2 years ago
3
All version dev
#468
aineniamh
closed
2 years ago
0
pangolin --all-versions broken with 4.1
#467
HadrienG
closed
2 years ago
15
No New Lineages Since March
#466
Boruchf
closed
2 years ago
9
Ambiguous_content
#465
antarapaul02
closed
2 years ago
9
replace minimap2 temp output file with pipe
#464
pcjentsch
closed
2 years ago
3
install pangolin
#463
jeansaplische
closed
2 years ago
4
usher mode: run scorpio, report conflicts, but don't override usher assignment
#462
AngieHinrichs
closed
2 years ago
0
skip scorpio in usher mode
#461
aineniamh
closed
2 years ago
1
Question regarding UNASSIGNED_LINEAGE_REPORTED
#460
EricFournier3
closed
2 years ago
4
another Usher error
#459
trilisser
closed
2 years ago
1
Pangolin --datadir with Usher
#458
tjdurant
closed
2 years ago
1
Cannot install pangolin with conda v4.12.0
#457
josesho
opened
2 years ago
6
Conflicting results in historical samples (unassigned). Constellation_version: v0.1.10
#456
elrubio89
closed
2 years ago
1
Pangolin assigning lineage BA.2.12 to different phylogenetic clades
#455
gyebra-phs
closed
2 years ago
2
No ambuiguity score
#454
Aduboahen
closed
2 years ago
2
pango-designation v1.9
#453
EricFournier3
closed
2 years ago
2
Error in rule usher_inference
#452
AndreaAguadoM
closed
2 years ago
10
Previous
Next