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In the past days I have been using this sane.py to connect to my scanner and did find some "quirks" (while learning a lot). See the list below. Except for point "f)", I think I have also found the rea…
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There are several links in the QIIME tutorials to an s3 bucket that won't exist any more when the release goes live. These should all be updated to point to a new location. Currently I have them in Dr…
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When using `orthogonal_procrustes` on two matrices that are identical, the result will be a matrix with a different shape than the inputs and a disparity value greater than zero:
```
In [19]: import …
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@gregcaporaso and I will work on this after #1777 is merged.
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With the latest master, if I run the tests in a fresh environment (I'm installing it on Pando) I'm receiving this doctest failure:
```
$ nosetests --with-doctest skbio/
..............................…
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I came across this while adding support for `split_libraries.py` into qiita. The issue is that `split_libraries.py` is inconsistent in its use of `_` and `-` within options. For instance, `--record_qu…
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Option –c (`COLUMN_RENAME_IDS`) in this script fails to assign a new `#SampleID` in the output files. This new `#SampleID` comes from a column in the mapping file, however if you use a non-existent co…
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There are a couple of imports from QIIME in the eval framework code (PCoA and Procrustes functionality). It'd be nice (though certainly not high priority) to remove QIIME as a dependency since it is k…
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... to facilitate computing pairwise distances between all pairs of samples in a biom table. Was experimenting with this while re-factoring some functionality for the taxonomy assignment paper and cam…